Gene Apar_0110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0110 
Symbol 
ID8412953 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp124691 
End bp125470 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content48% 
IMG OID645021677 
Productexodeoxyribonuclease III Xth 
Protein accessionYP_003179137 
Protein GI257783920 
COG category[L] Replication, recombination and repair 
COG ID[COG0708] Exonuclease III 
TIGRFAM ID[TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0939885 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAAA CTCAAGAATA CAAGTTGATT TCTTGGAACG TTAACGGCTT GCGCGCCGTA 
CTTAAAAAGG AACCTTCGTT CACAGAAATT TTTGAAACCA TAAATGCTGA TGTATTTGCC
CTTCAAGAAA CTAAGTTACA GGAAGGACAG GTTGAACTGG ACCTCCCTGG TTATGTTCAA
ACCTGGAATT ACGCAGATAG AAAAGGCTAT TCAGGCACAG CGGTTTTCTC GCGAGAAACC
CCTCTGCAGG TAATTCGTCA GATTGGATGT CCTGTTGCTG ACGATGAGGG TCGCGTCTGT
GCGCTGGAGT TTGAGAAGTT CTGGTTTGTG TGCGTGTACA CGCCAAACTC AAAAGACCAG
CTTGCACGCT TGGACGAGCG TCTTGAATGG GATCAGCACT ACCGTGATTT CTTGGCTGAA
CTGTCTAAGC AAAAACCAGT AATTACTTGT GGTGATTTCA ATGTTGCTCA CAACGAGATT
GACTTGAAAA ACCCATCGTC TAACAGGCAA AATGCGGGCT TCTCGGACGA GGAGCGCGAG
AGCTTTACCA AGCTTTTGGA CGCGGGCTTT ACCGACACGT TTAGGTATCG TCACCCTGAT
ATAACCGGCG CTTACAGCTG GTGGAGTTAC CGCTTCAACG CACGCAAGAA CAATGCTGGT
TGGCGCATCG ACTACTTCTT AGTCTCCGAT CGCATCGCTG AGCAGGTCAA GAGCGCATCC
ATTTTGAGTG AGATCTACGG TAGCGACCAC TGCCCTATTG AGCTAAGCAT TGAGCTGTAG
 
Protein sequence
MSQTQEYKLI SWNVNGLRAV LKKEPSFTEI FETINADVFA LQETKLQEGQ VELDLPGYVQ 
TWNYADRKGY SGTAVFSRET PLQVIRQIGC PVADDEGRVC ALEFEKFWFV CVYTPNSKDQ
LARLDERLEW DQHYRDFLAE LSKQKPVITC GDFNVAHNEI DLKNPSSNRQ NAGFSDEERE
SFTKLLDAGF TDTFRYRHPD ITGAYSWWSY RFNARKNNAG WRIDYFLVSD RIAEQVKSAS
ILSEIYGSDH CPIELSIEL