| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0086 |
|---|
| Symbol | |
|---|
| ID | 8412929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 95323 |
|---|
| End bp | 95814 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 645021653 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003179113 |
|---|
| Protein GI | 257783896 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTAA CACGTCGCGA GTTCATTTAT GCAGGTGCTT CTAGTTTGTT TGCTCTTGGA
TTGGTGGGCT GCGGAAACAG CGACACAACA TCCACGTCTA CTTCTGATGC GCAGAAGGAA
GATCAAAAGA AGTCGGAAGA GAAGCAGCCA GAAAAGTATG CGGTGACCAT TGGCACGCTT
ACGCAGATTG CTGATTACAA TGGCGATCCA GCAGCAAAAA TCACGTTCAA TTTCACAAAT
AACTCTGATG AGACCACTTC ATTTATGAGT TCAGTACGAG TTGAAGCGTA TCAGGATGGC
CAGCAGCTTG AAGTCGCAGT TATAACTAGC GGTGAGGTCA ATTGGGAAAG CACTGCGAAA
AAGATTAAGA CTGGAACAAG CCTTGATGTT GAGCAAGCTT ACAAGCTTAT TAGCTCGTCT
GATGTTGAGG TTGAAGTGTA TCCACTCTTT GGTAAGGATA AGCTTGCTGC TCAGACTTTT
AGTCTACAGT AA
|
|---|
| Protein sequence | MSLTRREFIY AGASSLFALG LVGCGNSDTT STSTSDAQKE DQKKSEEKQP EKYAVTIGTL
TQIADYNGDP AAKITFNFTN NSDETTSFMS SVRVEAYQDG QQLEVAVITS GEVNWESTAK
KIKTGTSLDV EQAYKLISSS DVEVEVYPLF GKDKLAAQTF SLQ
|
|---|
| |