Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0060 |
Symbol | |
ID | 8412902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 65966 |
End bp | 67723 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 645021626 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_003179087 |
Protein GI | 257783870 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACCTAG AGCATATTAA TGGACCGGAA GACGTAAAGA AGTTGGACTC AAAAGCTCGC TTGACGCTTG CCCAGGAGAT TCGCGAAAAT CTGCTGGTCA TGGAGTCAAA ACACGGTGGC CATTTTGGTC CAAACTTTGG TATTGTTGAG GCAACTATTG CGCTTCATAC CGTATTCAAC TCGCCCGTTG ACCATATCGT TTACGATGTC TCGCACCAGA CATATCCACA CAAGATGCTC ACTGGCCGCA AGCAAGCATA TATGGATCCC GCACTCTATG ACTCGGTGTC TCCTTACACC GATCCTGCTG AGACTCCGCA TGACCTCTTC AAGATTGGCC ATACTTCCAC GTCTATCAGC TTGGCGCTTG GCCTGGCAAA GGCTCGTGAC ATTATGGGCG GCAAGGAGAA TATCATCGCA GTTATCGGCG ACGGCTCGAT GTCCGGCGGC GAAGCGCTCG AGGGTTTAAA CGTTGCTGGC GAGCTGAACA GCAACTTTAT CATCGTTTTC AACGATAATC AGATGTCCAT TGCCGAGAAT CACGGCGGCA TGTACGACCA GTTCGCTGAG CTGCGCCGCA CCAATGGAAC TGCCGAGAAT AACCTTTTCA AGTCGATGGG CCTTGACTAC CTGTATGTTA ACGACGGCAA CAACATTGAG GCTCTTATCG ACGCGTTTGA GCAGGTAAAA GATATGACTC GCCCGGTTGT GGTTCACATT AATACGCTCA AGGGTAAGGG ATACGCTCCC GCGGAGGCAA ACAAGGAGAA GTGGCACTGG CATATGCCGT TCGACATCCA GACTGGTCAG AGCCCAGCGT CCGGTTCGTC CGAGTCGTAC GCCGGAATTT TTGCAGAGTA CGCGCTCAAG CGCGCAAAGA CCGATCCTAA GTTCTTGGTG CTCATGTCAG CTGTTCCTGG CCTACTTGGT CTTTCGCAGG AACGTCGAGA AGAGCTTGGA AAGCATTATC TTGACGTGGG CATTGCCGAA GAAACCGCAG TTGCAATGGC TTCCGGCGCG GCTCACGCGG GCGCGCACGT AGTTTGGGGT TCAAGTGCAA CCTTCATCCA ACGTACCTAC GACCAGTTAA CCCAGGACCT GTCGCTCAAT CAGAATCCCG CGGTTATTAT GGGCTCCGGC TCCATTAGAG GCTTGATGGC CGCCACTCAC CAGGGCCTCA GCAGTATTTC CATGATCGCA AACATCCCTA ACATGGTGTA CCTCGCACCG TCTAACGCCG AGGAGTACAT CGCTATGCTC GATTGGGCGC TTGAACAGGA TAAACACCCT GTCTACATCG CAATTTCTTC CGGTCCTGTG GTTCACGTCG AAGGTTCCGT TCGTACAAAC TTTGACGACC TCAACACCTA CGAGGTCACG CGTCAGGGCT CCAAGGTGGC TGTTCTTGCC CTGGGCGATT TCTACGACCT TGGCGAGAAA ACCGTCGAGG CCCTAAACTC TACTTTGGGA ATTGAAGCTA CGCTGGTCAA GCCATATTTT GCCTCTGGCG TCGACGAAAA TTTGCTCGAC AACCTGGTAA AAGATCACGA CGTCATCGTA ACCATTGAAG ATGGCATCAT CGAGGGTGGT TGGGGACAGA ATATTGCCAG TTACCTGGGA ACTTCTTCCG CGCGTGTGCT GAACTACGGC GTTAAGAAGG CCTTCTACGA CCGCGTCAAC ATTGCAGATC TTATGCGAGA AAGTCACCTT GACCCTGAAC TGATTGCTGC AGACGTCAAG CAGGTGTTGG GTTTGTAG
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Protein sequence | MYLEHINGPE DVKKLDSKAR LTLAQEIREN LLVMESKHGG HFGPNFGIVE ATIALHTVFN SPVDHIVYDV SHQTYPHKML TGRKQAYMDP ALYDSVSPYT DPAETPHDLF KIGHTSTSIS LALGLAKARD IMGGKENIIA VIGDGSMSGG EALEGLNVAG ELNSNFIIVF NDNQMSIAEN HGGMYDQFAE LRRTNGTAEN NLFKSMGLDY LYVNDGNNIE ALIDAFEQVK DMTRPVVVHI NTLKGKGYAP AEANKEKWHW HMPFDIQTGQ SPASGSSESY AGIFAEYALK RAKTDPKFLV LMSAVPGLLG LSQERREELG KHYLDVGIAE ETAVAMASGA AHAGAHVVWG SSATFIQRTY DQLTQDLSLN QNPAVIMGSG SIRGLMAATH QGLSSISMIA NIPNMVYLAP SNAEEYIAML DWALEQDKHP VYIAISSGPV VHVEGSVRTN FDDLNTYEVT RQGSKVAVLA LGDFYDLGEK TVEALNSTLG IEATLVKPYF ASGVDENLLD NLVKDHDVIV TIEDGIIEGG WGQNIASYLG TSSARVLNYG VKKAFYDRVN IADLMRESHL DPELIAADVK QVLGL
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