| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0026 |
|---|
| Symbol | |
|---|
| ID | 8412868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 31892 |
|---|
| End bp | 34006 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 645021595 |
|---|
| Product | phosphoribosylamine/glycine ligase |
|---|
| Protein accession | YP_003179056 |
|---|
| Protein GI | 257783839 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0151] Phosphoribosylamine-glycine ligase |
|---|
| TIGRFAM ID | [TIGR00877] phosphoribosylamine--glycine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGTCTT CGGACTGCTC AACTTTTGCA ATAGTTTGCG ATAACCCCTG TGGGCTTGAA
GTCTCCCAGC TTGAAGCCCT GGGGGTTTCT GTAATACCTG GAGCCCTAAG TTTTGATGTC
GATCAGGTAG GCAAGTTCTA TCGAGGTGTT TATGAGTCTG GAATTCATGA GATTCTCTCG
CTCCATGTGA ACGCAGGTTT TTCTGAATCG CTTCTTACAG CAAAAAAGGC GTGTCAGGAA
AATCCTGATA TTTCGGAGTC AATCTGTTTG GTAGACAGTG GAAATATGCC TACCGCCATG
GGAATTATGC TTGAACGTTT AAGTGTGGCA AGAAAGTCCG GAGCATCATT TGAGGCGGTC
TGCGCGTATG CGCAAGAACT TGCTGAAGTA GTTGCCACAA TGTATATCAC AATGAATAGG
ATTGCTCTGC ATAAAAGCAA AGGTAAGCAT CCTGGGCTTT CGTTAAGGCG TCGACTTGAG
CGTTTGCATA GGCGCATTTC AAATGATATG TATCTGTATC GTTTGGTTGG TGGAAGATGT
ACAGAAGTTG CTCGCTCATC AGATTTTACT GACCTAGCAG CAAGAATTTC TCGACTTATG
AGCGCTTGTT TTGTAAAGCG CGGCGAGCTT AAATATGTAG TGATTTCAAG TGGTGTGAAG
CGCATAGAAA AGCATCTCAA AAAGCCGCTT AAAACCAATG AATATGATGC AGAATGTATT
GCAGAAAGAC TTGCTTCTCC CGAGTTTAAA AAATATTTGG GAGAAGGCTC TGTTGGCGTT
GCTTGTATCC CAAAGGCGTT GTATCAGAAG GCTGGAGTAC TTATGAATGA CACCGTTGAT
ATTTTATTGC TTGGTGCGGG TGGCCGTGAG CATGCTCTTT TGACTAAGCT ACAAGAGTCA
TCTCGCGCAG GAAAAATTTA TGTTGCTCCA GGTAATGGTG GTATGGCTGC CCAGGCAGAG
ATTGCTCCTG TTGATCAGAA TAATCCTGAT GAGGTTGTTG CTTTTGCTAA GGAAAAAGGC
ATTGGCTTGG TAGTTATTGG TCCTGAGGCA CCTCTTGTTG TTGGCGTTGC AGACGCTGTT
CGTCAGGCTG GCATTGCATG CTTTGGTCCT AATAAAAACG CGGCTCAGAT GGAGGGTTCA
AAGGCGTTTG CCAAGGGTGT TATGGAGCGA GCAAACGTTC CGACTGCCGC TTGGAAGTCT
TTCACAGACC AGAAATCTTG TGAGTCGTAT GTTCGTCAGA TTGGCGCTCC TGTAGTTGTT
AAGGCAGATG GTCTTGCCGC AGGTAAAGGT GTTATTGTTG CAACTGAGCT TGAGCAAGCT
CTTGAAGGTG TTCGTGAGTG TTTCTCAGGT CATTTTGGTG ATGCGGGTGC AACCGTTGTT
GTTGAGGAGT TCCTTGAGGG ACCAGAGTGT TCGCTGCTTG CACTAACTGA TGGAACTCAC
GTTATTCCAC TAGCAACTGC CCAGGACCAT AAACGTGCTT ATGATGGCGA CAAAGGTCCA
AACACTGGTG GCATGGGCGT ATATTCTCCT GTTCCATTTG TGACCAATGA AGAACTTTCT
CAGATGAGTG CAATTGAGCA GCGTGTTGTT GACCAGCTCA GAAAAGAGGG CATCAACTAT
TCTGGTTGTC TTTATGGTGG ATTTATGCTG ACCAAGGATG GCCCCAAAGT TCTTGAGTTT
AACGCTCGCT TTGGCGATCC GGAGACTCAG GTAGTCCTGC CTCGTCTTGA GGGTGACTTG
GTTTCAATTT TAATGGCATG TGATAACAGC ACACTTCGTC ATCAACAGGT TGCTTGGTCT
GATTCGGTTG CTGTTTCTGT AGTTTTGGCA AGCGCTGGAT ATCCTGGTTC TTACGAGAAG
GGCAAGGAGA TCACTGGCAT TGAGGCTGCT CAACAGCTTG AAGGTGTCTC AGTTTATCAT
GCCGGAACTG CCCAAACTGA AGATGGAAAG ATTGTTACTG CTGGCGGACG CGTGCTTAAC
GTTACTGCTC TTGCTCCAAC TTTTGAAGAA GCTCGCGCTC GCGCATATGA GGCTTGTAAT
CTTATCAACT TTGAAGGTAA GCAGTTTAGG CACGATATTG GACTCAAGGC TCTTCAAAGC
CGCTCAGAAA AATAA
|
|---|
| Protein sequence | MASSDCSTFA IVCDNPCGLE VSQLEALGVS VIPGALSFDV DQVGKFYRGV YESGIHEILS
LHVNAGFSES LLTAKKACQE NPDISESICL VDSGNMPTAM GIMLERLSVA RKSGASFEAV
CAYAQELAEV VATMYITMNR IALHKSKGKH PGLSLRRRLE RLHRRISNDM YLYRLVGGRC
TEVARSSDFT DLAARISRLM SACFVKRGEL KYVVISSGVK RIEKHLKKPL KTNEYDAECI
AERLASPEFK KYLGEGSVGV ACIPKALYQK AGVLMNDTVD ILLLGAGGRE HALLTKLQES
SRAGKIYVAP GNGGMAAQAE IAPVDQNNPD EVVAFAKEKG IGLVVIGPEA PLVVGVADAV
RQAGIACFGP NKNAAQMEGS KAFAKGVMER ANVPTAAWKS FTDQKSCESY VRQIGAPVVV
KADGLAAGKG VIVATELEQA LEGVRECFSG HFGDAGATVV VEEFLEGPEC SLLALTDGTH
VIPLATAQDH KRAYDGDKGP NTGGMGVYSP VPFVTNEELS QMSAIEQRVV DQLRKEGINY
SGCLYGGFML TKDGPKVLEF NARFGDPETQ VVLPRLEGDL VSILMACDNS TLRHQQVAWS
DSVAVSVVLA SAGYPGSYEK GKEITGIEAA QQLEGVSVYH AGTAQTEDGK IVTAGGRVLN
VTALAPTFEE ARARAYEACN LINFEGKQFR HDIGLKALQS RSEK
|
|---|
| |