| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0016 |
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| Symbol | |
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| ID | 8412856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 20848 |
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| End bp | 22686 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645021583 |
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| Product | GTP-binding protein TypA |
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| Protein accession | YP_003179046 |
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| Protein GI | 257783829 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000119023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCAAG ACAATATCAG AAATATTGCT ATCATCGCCC ACGTTGACCA CGGCAAAACC
ACCATGGTTG ACCAGATGCT CAAGGCAACC GATGCATTCC GCGAGAACCA GCAGGTTCAA
GAAAGAATCC TGGACTCTAA TGATCAGGAG CGTGAGCGCG GAATTACTAT TCTGGCAAAA
AACATCTCTA TTGAGTATAA GGGCGTTAAG ATTAACGTCA TTGATACCCC CGGCCACGCT
GACTTCGGCG GCGAGGTAGA GCGTGTTTTA AAGATGGCTG ATGGTGCACT TCTTTTGGTT
GACGCTGCCG AGGGTCCTAT GCCACAGACT CGTTTTGTTC TGCGCCACGC TATCGACGCA
GGCCTTTCTA TCATGATGGT TGTCAATAAG ATTGACCGCG ATGGCGCTCG TCCAGAGGCT
GTTGTCAACG ATTCTCTTGA TCTTATGATG GACCTTGGCG CAACCGATGA GCAGCTTGAG
TTTACTATGG AGCACGTTGT CTTTGCTTCT GGTGTTAACG GTTATGCTCG CCTTGATCCA
AATGATGGCA ATGACAACAT GTTCCCTCTT CTCGATATGA TTATTGATGG CCTTCCAGCT
CCAGATGTTG ATATTGATGG TTCTCTTGCT ATGCAATGCG TTACCATTGA CCACTCCGAC
TACTTGGGCC GTATTGGTAT TGGCCGTGTA TATTCTGGAA CTGTTCATAC AGGCGATAAG
ATTCTTGTTG TTAAAAACGA TGGTTCTCGC GCTATGAGTC AGGTCAAACA GCTCTTTACC
TTTGACTACC TGGGCCGTAA GGAGTGCAGC GAGGTTGACG CGGGTGATAT CGCGGCAATC
GTTGGCGTTG ATAACACTGA CATTGGTGAC GTTTACACTG ATCCAGAGAA CCCTGTTGAG
CTTGATCCAA TTGAGATTGA TCCACCAACC CTTTCCATTA TTTTTGAGCC TTCTACCTCG
CCACTTGTTG GTCGTGAGGG AGACATTGTT GGTGGTCGTC AGCTCAAAGA GCGTCTTATG
ACAGAGCGCG AGAATAACGT TACCATGCGT ATCGAGGAGC TTCCTGATAA GACAGGTATT
GAGGTTTCTG GTCGCGGTAT TTTGCACCTC TCTGTTCTTA TGGAGAGCAT GCGACGTGAA
GGTTTTGAAT TCCAGGTTGG TCGTCCTCGC GTTTTGTTTA AGAAGGACGC TCAGGGCCAT
ACGCTTGAGC CTATTGAGCA GGCCGTTGTT GAGTGCAATC CAGAGTACGC TGGCAAGGTC
ATTGAGGTCT TTGGCAACGT TGGCGGTACC ATGTCTATCA TGGACACTGG CGAGACTCAG
ACACACCTTG AGTTCAAGAT TCCAACTCGC GGCATCATGG GTCTTAAGAC GCGTGTCATG
AATGTTACCC ACGGCGATGC TGTCTTCTAC CATACCTTCC TTGAGTACGG TCCTTTTGCA
GGTGATATTG GCAGTCGCCA GAATGGCGCT ATGATTTCTA TGTCAACCGA GAAGGCCGTA
GCTTATGCGC TTGGCACCCT TCAAGAGCGC GGTCAGCTCT TTGTTTCTCC AGGCGTCGAG
TGCTACGAGG GTATGTTGGT TGGCGAGCGT TCAAGGCCAG GTGACATGGT TGTTAACATT
GCACGTACTA AGTCTTTGGG CAACCAGAGG TCTTCAACTG CGGATATTTC AGTCCAGTTG
ACCCCTCCAC GTCTGTTTAC GTTAGAAGAA GCTCTAGAGT ACATCATGGA TGACGAGCTT
GTTGAGATTA CACCACTTAA CATTCGCATG CGTAAGCGTA TTCTTTCCGA GACCGAGCGT
CGTAAGTGGG CAGTTCGCAA CGGTATGGTT AAGAAGTAA
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| Protein sequence | MRQDNIRNIA IIAHVDHGKT TMVDQMLKAT DAFRENQQVQ ERILDSNDQE RERGITILAK
NISIEYKGVK INVIDTPGHA DFGGEVERVL KMADGALLLV DAAEGPMPQT RFVLRHAIDA
GLSIMMVVNK IDRDGARPEA VVNDSLDLMM DLGATDEQLE FTMEHVVFAS GVNGYARLDP
NDGNDNMFPL LDMIIDGLPA PDVDIDGSLA MQCVTIDHSD YLGRIGIGRV YSGTVHTGDK
ILVVKNDGSR AMSQVKQLFT FDYLGRKECS EVDAGDIAAI VGVDNTDIGD VYTDPENPVE
LDPIEIDPPT LSIIFEPSTS PLVGREGDIV GGRQLKERLM TERENNVTMR IEELPDKTGI
EVSGRGILHL SVLMESMRRE GFEFQVGRPR VLFKKDAQGH TLEPIEQAVV ECNPEYAGKV
IEVFGNVGGT MSIMDTGETQ THLEFKIPTR GIMGLKTRVM NVTHGDAVFY HTFLEYGPFA
GDIGSRQNGA MISMSTEKAV AYALGTLQER GQLFVSPGVE CYEGMLVGER SRPGDMVVNI
ARTKSLGNQR SSTADISVQL TPPRLFTLEE ALEYIMDDEL VEITPLNIRM RKRILSETER
RKWAVRNGMV KK
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