| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0013 |
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| Symbol | |
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| ID | 8412853 |
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| Type | |
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| Is gene spliced | No |
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| Is pseudo gene | Yes |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 17270 |
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| End bp | 18705 |
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| Gene Length | 1436 bp |
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| Protein Length | |
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| Translation table | |
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| GC content | 48% |
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| IMG OID | 645945277 |
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| Product | |
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| Protein accession | |
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| Protein GI | |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component |
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| TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component
[TIGR01427] PTS system, fructose subfamily, IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.357634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACGTCG TTGCTGTATG CGCTTGCACA GTTGGAATTG CTCATACCTG GATGGCAAAA
GAGGCTATCG AGAAAGAATG TGAGCGTCGT GGCTATGAAT ACAAAGTTGA AGCTCAAGGC
GGTTATGGTA TTGAGAATGA GCTTGAGCAG GATGAAATTG ACGCCGCTGA CGTTGTTCTT
CTCGCCATTG CAATTGGTAT TGAAGGCGAC GAGCGTTTTG ACGAGAAACG CGATGAAGGT
CGTGTTCTTA CGCTAGACCC ATCGCTTGCC ATTGCAGATC CAGCAAAGGT TATTGATCAG
GTAGTTGCGC TGGCTGAGTA GCAAGCGCGC AAGTAATAAT GCAAGGAAGA AGAGAGGAGA
AACCCATGGC AGAGGAAAAG AGTCCCTCAG TTTTGGGCAA GGTTGGAAAA GACCTTCTTA
AGGCGTTTAA CACTGGTGTT TCGTACTTTA TTCCTATTGT CGTAGTTGGC GGAGTCTTCT
TGGCTTTCTC GCTTGCTACA GGTACAGCAG GAAAAGACGG TATTGAAGTC ACCAATCCTT
TGATGCAGAG CCTCAACCTT ATTGGTATGG CTGGCATCAA GATGATGATT CCTGTCCTTG
CTGCGTACAT TGCCTATTCT TTGGGCGGAA AGCCTGCTCT GGCGCCTGGC TTTGTCCTTG
GTTACCTTGC AAGTAATCCT GTTCCTGTAG GCGAAGTTCA GGTTTCTACT GGCTTCTTGG
GTGCAATGGT CCTTGGTGTT GCTGCTGGTT ACCTTGTCCA GTGGATGAAG AGCTGGAAGG
TCAACAGCAC TATCCGTACC ATCATGCCAA TTCTGATTAT TCCAAGCTTG TCTTCGCTGG
CTCTTGGCAT GCTCTACATC TACGTTTTGG CAGCTCCACT TGGTGCATTC ATGGACTGGC
TGACAAGCCT GCTTTCAAGT CTTCAAGGTG GTTCCGCAGT TGTACTCGGT ATCGTAATTG
GTCTTATGAC TGCATTTGAC ATGGGCGGCC CAGTTAATAA GACTGCTTCT ACCTTTACCA
TGGCTCTTAT GACCGCAGGT GTTTATGGTC CTAACGGTGC ATTCCGTGTT GCAGTTGCTA
TTCCTCCACT GGTCTGCGGT GTTGCATCTC TTATTGCTCG CAGCAAGTTT GACGATACTG
ATAGGCAGAT GGGTATCTCC GCAGTCTTCA TGGGACTCAT TGGTATTACT GAGGGCGCAA
TTCCATTTGC AGTTAAGGAC CTTGCACACA CCTTGCCTGC AATCATGATT GGTTCTGCAG
TTGGTGCTGG TCTTGCTGCC TGGCATGGTA TTGAGTGCTT TGTTCCTCAC GGCGGCATGA
TTGTTGCTGC AGCTACAAAT AATATTGCCC TCTATACCCT TGATATGGCA ATTGGTGTTG
CAGTAGGTGT TGCAATCCTT GTTCTTACCA AGCCAAAGCT TGAGGACAAC AAGTAA
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| Protein sequence | |
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