Gene Apar_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0007 
Symbol 
ID8412845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp7921 
End bp10626 
Gene Length2706 bp 
Protein Length901 aa 
Translation table11 
GC content47% 
IMG OID645021573 
ProductDNA gyrase, A subunit 
Protein accessionYP_003179038 
Protein GI257783821 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.607285 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGAAG AATACGAAGA CGACGAGGTA GAAGAAGACT CTGATGAGTT TGATCCAGAA 
ACCGGAGTTA ATTTGGTAAC TGGAGAGAAT TCACACATTA TCTCTGATGA GGCTGGTACT
CGTCTTGATC TTTCTGACAT TCACGGAGGC ACACTCAAGC CGACCGATTT GTCTTCAGAA
ATGAAAACTT CCTTCCTTGA GTATTCCATG TCCGTTATTG TTGCTCGTGC ACTTCCTGAT
GTTCGAGACG GCCTTAAGCC TGTTCACCGC CGTATTCTGT ACGCAATGAG TGAGGCTGGC
ATTACGCCAA ACCGTCCACA TAAGAAGTCT GCGTGGGCAG TCGGTGAAGT CATGGGTAAG
TACCACCCAC ATGGTGACTC CGCTATTTAC GACTCCATGG TCCGTATGTC TCAGGACTTC
TCGATGAGAC TTCCTCTGAT TGACGGTCAC GGAAATTTTG GTTCTATCGA CGGCGATCCA
CCAGCAGCAA TGCGTTATAC CGAGGCACGT CTTACGAGAA GTGCAATGGA GATGCTGGCG
GAGCTCAACA AGAACACTGT TGATCTTCAA CCAAACTATG ATGAATCGCT GACAGAGCCA
GCAGTTCTTC CTGCTCGTTT CCCAAACCTC TTGGTAAACG GCTCTTCAGG TATTGCGGTT
GGTATGGCTA CCAACATTCC TCCTCACAAC CTTGGTGAGG TAACTGACGC AGTCTGCATG
ATGATTGATA ACCCTGAGGT TACCACTGAG GAACTCATGA CCGTTCTACC TGGTCCTGAT
TTTCCAACAG GCGGCATCAT CATGGGCACT CAGGGCATCA AAGATGCTTA TGAGACAGGT
CGTGGTTCTA TTACCGTCCG CGCTAAGGTT CACGTTGAAC AGGTAAAAAG CGGCCGTCAG
CGCCTTGTTG TTACCGAAAT TCCTTACCAG GTCAACAAAG GTCTTCTTCA GGAGAAGATT
GCTCAGGCAG TTAATGAGAA GAAAATTGAA GGCATTTCTG ACATGCGCGA TGAGTCCAAC
CGTAAGGGTA TGCGCATTGT CATTGACCTT AAACGCGATG CTGTTCCACA GGTTGTTCTG
AATAATCTCT ACAAGAAGAC TCAGCTTCAA TCTAACTTTG GCATCATTGA TCTAGCACTG
GTTGACGGTG TTCCTCGCAC ACTTTCTCTT CGTGAGATTT TGCGCCACTA CATTGATCAC
CAGATTGATG TTGTACGTCG TCGTACTGAG TTTGATCTTG ATAAAGCACA AAAGCGTGTC
CACATTCTGG AAGGTCTTTT AACTGCAGTT GATAACATTG ACGAGATCGT TCATATTATC
CGCAGTTCTC AGGATGATGC TGAAGCAAAG AAGCGTATGA ATGAGCGCTT TGGCCTGGAT
GAAATTCAGG GTGAAGCAAT TCTTCAAATG CGCCTACGTC GTCTTACTGG TCTGGCACGC
CAGGATCTTG TTGATGAAAT TTCCCAGCTC AGACTTGATA TTGCTTATTA TGAGGATCTT
CTCGCCCATG AGGAAAAGAT TCTGGCAGTT ATTGCTGATG AGCTCCGTGA GATTTCCAAC
CGCTATGCCG ATAAGCGTCG TACTCAAATT TCTGAGCAGG ATATTCAGAA CTTGGATGTT
GAGGATCTTA TCGCTGAAGA GGATATGGTT GTCACCGTCA CTCATGCTGG CTACGTAAAG
CGTGTTCCTG TTGAGATTTA TCGCTCTCAG AAGCGTGGAG GCAAGGGCGT TCAAGGTGTC
TCTCTCAAAG AGAACGATTT TGTTGAGAAC CTCTTTGTCG CGTCTACCCA TGATTATGTG
CTGTTCTTTA CCAACCTTGG AAAGGTGTAT CGTCTCAAGG TACATGAGCT CCCTGTTGGT
AGTAGAACCA CCAAGGGTAG CGCCATCATC AATGTTATCG AGACGCTTGC AGAGGGTGAG
AAAGTCAAGG CAGTTATTAC TACTCGTGAC TTCCCAGAAG ACAATTATCT GATGTTTGCT
ACTAAGCAAG GCATGGTTAA GAAGACCGCA ATGTCTGAGT ACGACCGTAC CCGTAAAGAT
GGTCTCATTG CCATTAACCT CAAGGACGGA GACGAGCTTG TTAACGTCCG TCGTGTCCAC
CCAGGTGACA AGGTTGTTCT GTGCTCCTCT GACGGTAAAG CAATCCTATT TGACGAGGCA
GAGGCAAGAA GCATGGGCCG TGGTACTTCG GGTGTCCGTG GTATTACGCT TAAGGGCAAT
GCAACTATGC TTGGCATGGA AATTACCAAC GGAAACGGTG ACCTTTTCGT TATCACCGAG
AAGGGCTATG GAAAGCGCAC AGCGATTTCT GAGTATCCAG TCCATAAGCG TGGTGGACAG
GGTGTCTTCA CCATCACAAT GACAGAGAAA AAGGGTAACT TGGTTGCCTG CCGTGTTGTT
GGTCCTCAGC ACGAGATTAT GATCATGTCC GAAGAAGGCG TCGTAATCCG TGTTAAAGCT
GGTGATATTT CCAAGCTTGG CCGTTCCACT CAGGGTGTTA AGGTCATGAA TCTCTCTGGT
AGTGATGTTG TTTCTGCTGT TGCTCGTATG GTTGCCAACA AAAAGAAAGC TCCAAAGCAC
GCGGAGAATC AAGGTATGCT TGATTTAATG TCTGCGGGGG CCCGTGATGC GGACGAGGCT
GAGTCTGTTG ACCTCGGAGA TGAAGAAGAA GCACTGGACG ATTCATTATT AGATGATGAC
GAATAA
 
Protein sequence
MDEEYEDDEV EEDSDEFDPE TGVNLVTGEN SHIISDEAGT RLDLSDIHGG TLKPTDLSSE 
MKTSFLEYSM SVIVARALPD VRDGLKPVHR RILYAMSEAG ITPNRPHKKS AWAVGEVMGK
YHPHGDSAIY DSMVRMSQDF SMRLPLIDGH GNFGSIDGDP PAAMRYTEAR LTRSAMEMLA
ELNKNTVDLQ PNYDESLTEP AVLPARFPNL LVNGSSGIAV GMATNIPPHN LGEVTDAVCM
MIDNPEVTTE ELMTVLPGPD FPTGGIIMGT QGIKDAYETG RGSITVRAKV HVEQVKSGRQ
RLVVTEIPYQ VNKGLLQEKI AQAVNEKKIE GISDMRDESN RKGMRIVIDL KRDAVPQVVL
NNLYKKTQLQ SNFGIIDLAL VDGVPRTLSL REILRHYIDH QIDVVRRRTE FDLDKAQKRV
HILEGLLTAV DNIDEIVHII RSSQDDAEAK KRMNERFGLD EIQGEAILQM RLRRLTGLAR
QDLVDEISQL RLDIAYYEDL LAHEEKILAV IADELREISN RYADKRRTQI SEQDIQNLDV
EDLIAEEDMV VTVTHAGYVK RVPVEIYRSQ KRGGKGVQGV SLKENDFVEN LFVASTHDYV
LFFTNLGKVY RLKVHELPVG SRTTKGSAII NVIETLAEGE KVKAVITTRD FPEDNYLMFA
TKQGMVKKTA MSEYDRTRKD GLIAINLKDG DELVNVRRVH PGDKVVLCSS DGKAILFDEA
EARSMGRGTS GVRGITLKGN ATMLGMEITN GNGDLFVITE KGYGKRTAIS EYPVHKRGGQ
GVFTITMTEK KGNLVACRVV GPQHEIMIMS EEGVVIRVKA GDISKLGRST QGVKVMNLSG
SDVVSAVARM VANKKKAPKH AENQGMLDLM SAGARDADEA ESVDLGDEEE ALDDSLLDDD
E