Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0007 |
Symbol | |
ID | 8412845 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 7921 |
End bp | 10626 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 645021573 |
Product | DNA gyrase, A subunit |
Protein accession | YP_003179038 |
Protein GI | 257783821 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.607285 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGAAG AATACGAAGA CGACGAGGTA GAAGAAGACT CTGATGAGTT TGATCCAGAA ACCGGAGTTA ATTTGGTAAC TGGAGAGAAT TCACACATTA TCTCTGATGA GGCTGGTACT CGTCTTGATC TTTCTGACAT TCACGGAGGC ACACTCAAGC CGACCGATTT GTCTTCAGAA ATGAAAACTT CCTTCCTTGA GTATTCCATG TCCGTTATTG TTGCTCGTGC ACTTCCTGAT GTTCGAGACG GCCTTAAGCC TGTTCACCGC CGTATTCTGT ACGCAATGAG TGAGGCTGGC ATTACGCCAA ACCGTCCACA TAAGAAGTCT GCGTGGGCAG TCGGTGAAGT CATGGGTAAG TACCACCCAC ATGGTGACTC CGCTATTTAC GACTCCATGG TCCGTATGTC TCAGGACTTC TCGATGAGAC TTCCTCTGAT TGACGGTCAC GGAAATTTTG GTTCTATCGA CGGCGATCCA CCAGCAGCAA TGCGTTATAC CGAGGCACGT CTTACGAGAA GTGCAATGGA GATGCTGGCG GAGCTCAACA AGAACACTGT TGATCTTCAA CCAAACTATG ATGAATCGCT GACAGAGCCA GCAGTTCTTC CTGCTCGTTT CCCAAACCTC TTGGTAAACG GCTCTTCAGG TATTGCGGTT GGTATGGCTA CCAACATTCC TCCTCACAAC CTTGGTGAGG TAACTGACGC AGTCTGCATG ATGATTGATA ACCCTGAGGT TACCACTGAG GAACTCATGA CCGTTCTACC TGGTCCTGAT TTTCCAACAG GCGGCATCAT CATGGGCACT CAGGGCATCA AAGATGCTTA TGAGACAGGT CGTGGTTCTA TTACCGTCCG CGCTAAGGTT CACGTTGAAC AGGTAAAAAG CGGCCGTCAG CGCCTTGTTG TTACCGAAAT TCCTTACCAG GTCAACAAAG GTCTTCTTCA GGAGAAGATT GCTCAGGCAG TTAATGAGAA GAAAATTGAA GGCATTTCTG ACATGCGCGA TGAGTCCAAC CGTAAGGGTA TGCGCATTGT CATTGACCTT AAACGCGATG CTGTTCCACA GGTTGTTCTG AATAATCTCT ACAAGAAGAC TCAGCTTCAA TCTAACTTTG GCATCATTGA TCTAGCACTG GTTGACGGTG TTCCTCGCAC ACTTTCTCTT CGTGAGATTT TGCGCCACTA CATTGATCAC CAGATTGATG TTGTACGTCG TCGTACTGAG TTTGATCTTG ATAAAGCACA AAAGCGTGTC CACATTCTGG AAGGTCTTTT AACTGCAGTT GATAACATTG ACGAGATCGT TCATATTATC CGCAGTTCTC AGGATGATGC TGAAGCAAAG AAGCGTATGA ATGAGCGCTT TGGCCTGGAT GAAATTCAGG GTGAAGCAAT TCTTCAAATG CGCCTACGTC GTCTTACTGG TCTGGCACGC CAGGATCTTG TTGATGAAAT TTCCCAGCTC AGACTTGATA TTGCTTATTA TGAGGATCTT CTCGCCCATG AGGAAAAGAT TCTGGCAGTT ATTGCTGATG AGCTCCGTGA GATTTCCAAC CGCTATGCCG ATAAGCGTCG TACTCAAATT TCTGAGCAGG ATATTCAGAA CTTGGATGTT GAGGATCTTA TCGCTGAAGA GGATATGGTT GTCACCGTCA CTCATGCTGG CTACGTAAAG CGTGTTCCTG TTGAGATTTA TCGCTCTCAG AAGCGTGGAG GCAAGGGCGT TCAAGGTGTC TCTCTCAAAG AGAACGATTT TGTTGAGAAC CTCTTTGTCG CGTCTACCCA TGATTATGTG CTGTTCTTTA CCAACCTTGG AAAGGTGTAT CGTCTCAAGG TACATGAGCT CCCTGTTGGT AGTAGAACCA CCAAGGGTAG CGCCATCATC AATGTTATCG AGACGCTTGC AGAGGGTGAG AAAGTCAAGG CAGTTATTAC TACTCGTGAC TTCCCAGAAG ACAATTATCT GATGTTTGCT ACTAAGCAAG GCATGGTTAA GAAGACCGCA ATGTCTGAGT ACGACCGTAC CCGTAAAGAT GGTCTCATTG CCATTAACCT CAAGGACGGA GACGAGCTTG TTAACGTCCG TCGTGTCCAC CCAGGTGACA AGGTTGTTCT GTGCTCCTCT GACGGTAAAG CAATCCTATT TGACGAGGCA GAGGCAAGAA GCATGGGCCG TGGTACTTCG GGTGTCCGTG GTATTACGCT TAAGGGCAAT GCAACTATGC TTGGCATGGA AATTACCAAC GGAAACGGTG ACCTTTTCGT TATCACCGAG AAGGGCTATG GAAAGCGCAC AGCGATTTCT GAGTATCCAG TCCATAAGCG TGGTGGACAG GGTGTCTTCA CCATCACAAT GACAGAGAAA AAGGGTAACT TGGTTGCCTG CCGTGTTGTT GGTCCTCAGC ACGAGATTAT GATCATGTCC GAAGAAGGCG TCGTAATCCG TGTTAAAGCT GGTGATATTT CCAAGCTTGG CCGTTCCACT CAGGGTGTTA AGGTCATGAA TCTCTCTGGT AGTGATGTTG TTTCTGCTGT TGCTCGTATG GTTGCCAACA AAAAGAAAGC TCCAAAGCAC GCGGAGAATC AAGGTATGCT TGATTTAATG TCTGCGGGGG CCCGTGATGC GGACGAGGCT GAGTCTGTTG ACCTCGGAGA TGAAGAAGAA GCACTGGACG ATTCATTATT AGATGATGAC GAATAA
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Protein sequence | MDEEYEDDEV EEDSDEFDPE TGVNLVTGEN SHIISDEAGT RLDLSDIHGG TLKPTDLSSE MKTSFLEYSM SVIVARALPD VRDGLKPVHR RILYAMSEAG ITPNRPHKKS AWAVGEVMGK YHPHGDSAIY DSMVRMSQDF SMRLPLIDGH GNFGSIDGDP PAAMRYTEAR LTRSAMEMLA ELNKNTVDLQ PNYDESLTEP AVLPARFPNL LVNGSSGIAV GMATNIPPHN LGEVTDAVCM MIDNPEVTTE ELMTVLPGPD FPTGGIIMGT QGIKDAYETG RGSITVRAKV HVEQVKSGRQ RLVVTEIPYQ VNKGLLQEKI AQAVNEKKIE GISDMRDESN RKGMRIVIDL KRDAVPQVVL NNLYKKTQLQ SNFGIIDLAL VDGVPRTLSL REILRHYIDH QIDVVRRRTE FDLDKAQKRV HILEGLLTAV DNIDEIVHII RSSQDDAEAK KRMNERFGLD EIQGEAILQM RLRRLTGLAR QDLVDEISQL RLDIAYYEDL LAHEEKILAV IADELREISN RYADKRRTQI SEQDIQNLDV EDLIAEEDMV VTVTHAGYVK RVPVEIYRSQ KRGGKGVQGV SLKENDFVEN LFVASTHDYV LFFTNLGKVY RLKVHELPVG SRTTKGSAII NVIETLAEGE KVKAVITTRD FPEDNYLMFA TKQGMVKKTA MSEYDRTRKD GLIAINLKDG DELVNVRRVH PGDKVVLCSS DGKAILFDEA EARSMGRGTS GVRGITLKGN ATMLGMEITN GNGDLFVITE KGYGKRTAIS EYPVHKRGGQ GVFTITMTEK KGNLVACRVV GPQHEIMIMS EEGVVIRVKA GDISKLGRST QGVKVMNLSG SDVVSAVARM VANKKKAPKH AENQGMLDLM SAGARDADEA ESVDLGDEEE ALDDSLLDDD E
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