| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0004 |
|---|
| Symbol | |
|---|
| ID | 8412842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 4080 |
|---|
| End bp | 5171 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 645021570 |
|---|
| Product | DNA replication and repair protein RecF |
|---|
| Protein accession | YP_003179035 |
|---|
| Protein GI | 257783818 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGACTTA AAGTTGAACA TGTTTCGCTG TATAACTTTC GTTGTTTTGC TTCGAAAGAG
ATAGATTTAT CTGCTCAAAC TACTATTTTT GTAGGAAAAA ATGCTGCAGG TAAGACAAAT
ACTGTTGAAG CATTACAACT TCTTACGGCT GGATATTCTT TTAGAAAACC AACACCTTCA
CAACTTTTAC TGACAGATAC CTCTGAAGCA AAGATAGAGA TTTCTCTTAC AGGAGACGGA
CGAAAGCTAG AAAATACCTG CATCATCACA GAGCGTCGTC GTCAATTTTC AAAAAATGGT
AAGAAATGCC AGGCAGCAGA CATTTCTGGC ACACTGATGT CAATACTTTT TAATCCTGAT
GACCTTTCAA TGATTAAAGG TGGTGCTTCA TACCGCCGCG AAGAATTTGA TGACTTTGGT
CGCCAAGCAA ATAAAAGTTA CTTTAAGGTT TTCTCGACAT ATATCAAAAC AGTTGAGCAA
AGAAATAAGC TGCTGAAATC TGATTGGCCA GACGAAAATT TGCTTGATGC ATGGGATCTC
TCACTTGCAA GGGGAGGAGC CATTCTTCTT CATGCGCGCA TTCATTTGTT TGAACGTCTG
GCAAAGAAAA CTTGTGAAAT TTATCAGGAG CTTTCTGGTG GTGAACACTT GGAAATGAAT
TATATTTCTT CAATTGGAGA GATATCTCTT GAAGCCTCTA GAGAAGAAAT ATCTGATCAA
TTCTTACAGG CTTTGAACGA AATTCGTATA GATGATATTC GCCGTCAGCA AAGTACTAAA
GGTCCTCATC GAGATGATGT AGAGTTTTTA ATTGAGGGTA AAGAGGCTAG AAATTTTGGT
TCTCAAGGTC AAATTAGAAC TGTTGTCTTA GCGCTTAAAA TGGCAGAAGT TTTACTTTCA
GAAGAAATAC TTGGTGAGAA ACCCTTACTA CTTCTAGATG ATGTTATGAG TGAGCTCGAT
GAAGATCGCA GAAAAGCTAT TATGGAATTT GCGTTTCATG ATATCCAAAC AGTAATTACA
ACCACCAACC TTGGCTATTT CTCTGAGGAG ATTCTAGAGA AAGCGCAAAT AGTTAGGTTT
AGCGATGAAT AA
|
|---|
| Protein sequence | MGLKVEHVSL YNFRCFASKE IDLSAQTTIF VGKNAAGKTN TVEALQLLTA GYSFRKPTPS
QLLLTDTSEA KIEISLTGDG RKLENTCIIT ERRRQFSKNG KKCQAADISG TLMSILFNPD
DLSMIKGGAS YRREEFDDFG RQANKSYFKV FSTYIKTVEQ RNKLLKSDWP DENLLDAWDL
SLARGGAILL HARIHLFERL AKKTCEIYQE LSGGEHLEMN YISSIGEISL EASREEISDQ
FLQALNEIRI DDIRRQQSTK GPHRDDVEFL IEGKEARNFG SQGQIRTVVL ALKMAEVLLS
EEILGEKPLL LLDDVMSELD EDRRKAIMEF AFHDIQTVIT TTNLGYFSEE ILEKAQIVRF
SDE
|
|---|
| |