Gene Apar_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0004 
Symbol 
ID8412842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp4080 
End bp5171 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content38% 
IMG OID645021570 
ProductDNA replication and repair protein RecF 
Protein accessionYP_003179035 
Protein GI257783818 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGACTTA AAGTTGAACA TGTTTCGCTG TATAACTTTC GTTGTTTTGC TTCGAAAGAG 
ATAGATTTAT CTGCTCAAAC TACTATTTTT GTAGGAAAAA ATGCTGCAGG TAAGACAAAT
ACTGTTGAAG CATTACAACT TCTTACGGCT GGATATTCTT TTAGAAAACC AACACCTTCA
CAACTTTTAC TGACAGATAC CTCTGAAGCA AAGATAGAGA TTTCTCTTAC AGGAGACGGA
CGAAAGCTAG AAAATACCTG CATCATCACA GAGCGTCGTC GTCAATTTTC AAAAAATGGT
AAGAAATGCC AGGCAGCAGA CATTTCTGGC ACACTGATGT CAATACTTTT TAATCCTGAT
GACCTTTCAA TGATTAAAGG TGGTGCTTCA TACCGCCGCG AAGAATTTGA TGACTTTGGT
CGCCAAGCAA ATAAAAGTTA CTTTAAGGTT TTCTCGACAT ATATCAAAAC AGTTGAGCAA
AGAAATAAGC TGCTGAAATC TGATTGGCCA GACGAAAATT TGCTTGATGC ATGGGATCTC
TCACTTGCAA GGGGAGGAGC CATTCTTCTT CATGCGCGCA TTCATTTGTT TGAACGTCTG
GCAAAGAAAA CTTGTGAAAT TTATCAGGAG CTTTCTGGTG GTGAACACTT GGAAATGAAT
TATATTTCTT CAATTGGAGA GATATCTCTT GAAGCCTCTA GAGAAGAAAT ATCTGATCAA
TTCTTACAGG CTTTGAACGA AATTCGTATA GATGATATTC GCCGTCAGCA AAGTACTAAA
GGTCCTCATC GAGATGATGT AGAGTTTTTA ATTGAGGGTA AAGAGGCTAG AAATTTTGGT
TCTCAAGGTC AAATTAGAAC TGTTGTCTTA GCGCTTAAAA TGGCAGAAGT TTTACTTTCA
GAAGAAATAC TTGGTGAGAA ACCCTTACTA CTTCTAGATG ATGTTATGAG TGAGCTCGAT
GAAGATCGCA GAAAAGCTAT TATGGAATTT GCGTTTCATG ATATCCAAAC AGTAATTACA
ACCACCAACC TTGGCTATTT CTCTGAGGAG ATTCTAGAGA AAGCGCAAAT AGTTAGGTTT
AGCGATGAAT AA
 
Protein sequence
MGLKVEHVSL YNFRCFASKE IDLSAQTTIF VGKNAAGKTN TVEALQLLTA GYSFRKPTPS 
QLLLTDTSEA KIEISLTGDG RKLENTCIIT ERRRQFSKNG KKCQAADISG TLMSILFNPD
DLSMIKGGAS YRREEFDDFG RQANKSYFKV FSTYIKTVEQ RNKLLKSDWP DENLLDAWDL
SLARGGAILL HARIHLFERL AKKTCEIYQE LSGGEHLEMN YISSIGEISL EASREEISDQ
FLQALNEIRI DDIRRQQSTK GPHRDDVEFL IEGKEARNFG SQGQIRTVVL ALKMAEVLLS
EEILGEKPLL LLDDVMSELD EDRRKAIMEF AFHDIQTVIT TTNLGYFSEE ILEKAQIVRF
SDE