| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0003 |
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| Symbol | |
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| ID | 8412841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 2964 |
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| End bp | 4064 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 645021569 |
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| Product | DNA polymerase III, beta subunit |
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| Protein accession | YP_003179034 |
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| Protein GI | 257783817 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
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| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTA CTGTAAGTCA ATCCGCTCTC CAGACGGCAC TTGATATTGT TTCTAAGGGT
ATTGGTTCTA ATACAACACT TCCAATTCTT TCTGGTATTT ATCTCAAAGC TTTTAATGGC
ATGCTTGAAT TACAGTCAAG CGACTTAACT ATTTCAATTA AGCATCAAAT TGCAGCAAAT
GTTGAAGAAG AGGGTGAAAC AGTTGTTTCT GGAAAGGTTA TCCAAAACAT TGTTAAAAAT
CTTCCTGATG CTGCAATCAC CTTTGAAGGT GGAGAACGTA CACTTTCTGT AATTTGTCAG
CGCTCATCCT TTAGACTCAA TACTCTTTCT GCTCATGATT GGGCACAATT CCCAGAATTT
AATCTCGAGA AAACTTGTGA ACTTCCAAGT CAGCTTCTAT CAACTATGGT TGATAAAGTT
TATCGAGTAA CTTCAAAGGA AGTATCTCGT CCTATTCTTC AGGGAATTTC TCTAACTGTT
GAAGACAACA CTATTCGTCT TGTGGCTACT GACTCATTCC GTCTTGCTGT TTGTGATTCC
AATACAGATA CTCCAGCTGG CGAATCTTTT AGCATAATTA TTTCTGGCGA GGTTTTCCAC
GACGTTCTCT CAATGCGTAG CATGACAGAG AAAGTTTTGA TTGGCACTAC AGATAATCAA
GTAATCTTCC AGTTTGGAAA TACCACTCAT ATTTCTCGTA AGATTGAAGG TCATTTCCCA
GATTATAAAC AACTGCTTCC AACGTCTTGC ACTGCATCTG TTGATATTAA TGTTGAAGAT
TTCTCCGCAG CTCTGAAGCG CGTTTCTGTT ATTGCTCTAG CAAACCCATC AGTACGCTTT
GATGTTGATG CTGACGGAAA AGAAGTTAAG CTTTCTGCTT CTTCACCAGA CCAAGGTGAA
TCCTCTGAAC ACATTGAAGC TCAAATTGAG GGAGACTCTC TTTCGATTGC TTTGAATTAT
CACTACGTTT TTGATTGTGT GAATGCTGCT CCTTCTAAGG ATCTTTTACG TCTTGAACTT
CAAGGTCCTT CTCAACCAGC TATTTTCAAA TCAAATGGTA AGGTCAACTA TTTGTATCTT
CTGATGCCTG TTCGCCTCTA A
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| Protein sequence | MKFTVSQSAL QTALDIVSKG IGSNTTLPIL SGIYLKAFNG MLELQSSDLT ISIKHQIAAN
VEEEGETVVS GKVIQNIVKN LPDAAITFEG GERTLSVICQ RSSFRLNTLS AHDWAQFPEF
NLEKTCELPS QLLSTMVDKV YRVTSKEVSR PILQGISLTV EDNTIRLVAT DSFRLAVCDS
NTDTPAGESF SIIISGEVFH DVLSMRSMTE KVLIGTTDNQ VIFQFGNTTH ISRKIEGHFP
DYKQLLPTSC TASVDINVED FSAALKRVSV IALANPSVRF DVDADGKEVK LSASSPDQGE
SSEHIEAQIE GDSLSIALNY HYVFDCVNAA PSKDLLRLEL QGPSQPAIFK SNGKVNYLYL
LMPVRL
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