| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_3163 |
|---|
| Symbol | |
|---|
| ID | 8412716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | + |
|---|
| Start bp | 3053850 |
|---|
| End bp | 3054527 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 645021510 |
|---|
| Product | Bacterio-opsin activator HTH domain protein |
|---|
| Protein accession | YP_003178975 |
|---|
| Protein GI | 257389202 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3413] Predicted DNA binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.534144 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGACG GACGAACGGC GGCCAACGGC CGCATGAAAC GGATCCAGTT CTCGGTCACG
TACCCAGATC GGCTCCGTCA CCCCCTCCAG AGCCACCTCG AAGGCGACGG GCCGCTCACG
CGAGCCGAGC TGTTGCTGTG GAGTCCGACG GCGGACGCGA CGACGCTGTG CTGGTTCGAC
GGCGGGCCGG CGGCCGTCGA GCGCGCGGTC GCGACGATCG ACTCGCTGGA GACGACCAGC
CACGTTCGGG ACGGCGACGG GACCTACGTC TACCTCCAGC AGGACGGGTT CGAGTTTCCC
GACGTGGTGC TGGACCTGAT CGCCGACGCC GCGGTGATCT TCCGCCCGCC GGTGGTGTTT
CGCGACGACG GGACGATCTC GTTCGAGGCC GTCGGCGAGA CGAGCGCCTT CAGCGCCTTT
CACGACGCAC TCGCGGCGGT CGGGGATCTC TCGATCGAGC GGGTCCGGCC GTTCGAACGC
TCCAGTCGCC CCGCACGGCT CACCGATCGA CAGCGAGCGG CCATCGAGGC GGCGGTGGCG
GTCGGCTACT ACGAGATCCC GCGCGAGGGC ACGATCGGGG ACGTGGCGGC GCGACTCGAC
TGCGCGACCA GCACGGCGGG CGAACTCGTT CGGAAGGCCG AGGCCGCGGT CGTCGAGGGC
GTCGTCGACC GCCAGTAG
|
|---|
| Protein sequence | MPDGRTAANG RMKRIQFSVT YPDRLRHPLQ SHLEGDGPLT RAELLLWSPT ADATTLCWFD
GGPAAVERAV ATIDSLETTS HVRDGDGTYV YLQQDGFEFP DVVLDLIADA AVIFRPPVVF
RDDGTISFEA VGETSAFSAF HDALAAVGDL SIERVRPFER SSRPARLTDR QRAAIEAAVA
VGYYEIPREG TIGDVAARLD CATSTAGELV RKAEAAVVEG VVDRQ
|
|---|
| |