| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_3148 |
|---|
| Symbol | |
|---|
| ID | 8412701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | - |
|---|
| Start bp | 3035898 |
|---|
| End bp | 3037589 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 645021495 |
|---|
| Product | glycoside hydrolase family 18 |
|---|
| Protein accession | YP_003178960 |
|---|
| Protein GI | 257389187 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3325] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00268374 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGAAA CACGACGCGA CGTTCTTCGG AACGCCTCGG CGCTGGTCGC AGCGTTGACC
GGCGCTGGCA CAGCAGCGGC ACAGCAATCA CCCCCGGCCT ACGACGACGG CACGGTCTAC
ACCGGCGGGG ATCGAGTGAC CTACGACGGT TCCGTCTGGG AGGCCAGTTG GTGGACCCAG
GGGACGCCCC CGTCGACGGA CGCGGCGGTC TGGGAACGCA TCGACGCCGA CGACGGTGGC
GGTGACGACT CCGGCGACGG CTCGTACCCG GCCTGGGACG CCAGCGTCGC CTACAGTGGC
GGGGACCGGG TGACTCACGA CGGCTCCGTC TGGGAGGCGG CGTGGTGGAC GAAAGGGACC
GAGCCCGCCG CCGACGCGAC CGTCTGGGCA CTGGTCGAGA GCGACGACGG CTCCGACGGC
GACGAGAACG GGGCACCGAC GGCCGTCGTC GGCGTCACTC CCTCGGCACC GACGCCGGGC
GAGACGGTGA CCTTCTCCGG GGCCGACTCC TCGGACCCCG ACGGCGACGC GCTGGACTAC
GAGTGGACCA TCGACGGCGA CACGGTGACC GGCGTCGAAC ACACGCGGTC GTTCGAGTAC
GCCGGGGAGT ACGCCGTCAG CCTGACCGTC ACCGACGGCT CGGGGGCCAG TGACTCGGCC
ACGACGACGG TGTCGGTCTC CGAGGGAGAC GGGTCCTCGC CGGGCTGGGA CGAGCACCCG
GTCATGGCCT ACGAGTTCCA GGGGGCAGCC CCGGCCGACA AGCTCACCCA CGTCATCCAG
ACGTTCGGCA GCGTCAGCGC CGACGGCTCC GTCTCGGCAC CGTGGGACGC CGGGGGTATC
GACGGCGTCA CCACGCTCCT CTCGATCGGC GGCTGGAAGA ACTCCCAGGG GTTCCCGGAA
CTGGCGAGCG ATCGGGAGAG CCGGGAGACG TTCGCCAGCG AGTGTGTCGC GCTCCTGCGT
GACCGCGATC TCGACGGCAT CGACATCGAC TGGGAGTTCC CCGGTCCGTA CGGTCCCGAC
GGACTCACGT CGTACCCCGA CGACGAGGAG AACTTCGCCG CGCTGATCGA GGAGTGTCGC
CGACAGTTCG ACGCGGCCGC CGCCGAGGAC GACACCGAGT ACTACCTCAC AGCGGCGCTG
AACCACGCGG AGTCACATCT CTCCGGACTC CCCCACGACC GGCTCGCCGA CGCGCTGGAC
TACGCGAAGA TGATGACCTA CGACATGCAC TCGCCGGTCT GGGTCGACGA GACCAACCAC
AACTCGCCGC TGTACGCCAC CTCCGGAGCC GACAGCGACG ACTCGATCCA CAACACCCTC
ACGTACATGC GCGAGCAGGG ATGGCCCGCG GAGAAGCTCG TCATGGGACT GGCCTTCTAC
GGCCGCGAGT TCACCGGCGT CGAGAGCACG GCCAACGACG GGCTGCTCCA GCCCTTCGGA
GGCAGCGGCG GGGCCACCGG CTTCGCCGAC ATCGACCAGC AGTTCGGGGG CCACACCCGC
TACTGGGACG ACGAGGCGAA GGTGCCCTAC AAGTTCGACG GCAGTAGCCT GCTGAGCTAC
GACGACGAGG AGTCGGTCGC GGTCAAGGCC GACTACGCAG ACGAGCGGGG CCACCCCATC
ATGTACTGGG CCTCCGGTCA CGACCCCAAC GAGACGCTGA TCGACGCGGT CAACGACGCG
CTCGGGAAGT GA
|
|---|
| Protein sequence | MRETRRDVLR NASALVAALT GAGTAAAQQS PPAYDDGTVY TGGDRVTYDG SVWEASWWTQ
GTPPSTDAAV WERIDADDGG GDDSGDGSYP AWDASVAYSG GDRVTHDGSV WEAAWWTKGT
EPAADATVWA LVESDDGSDG DENGAPTAVV GVTPSAPTPG ETVTFSGADS SDPDGDALDY
EWTIDGDTVT GVEHTRSFEY AGEYAVSLTV TDGSGASDSA TTTVSVSEGD GSSPGWDEHP
VMAYEFQGAA PADKLTHVIQ TFGSVSADGS VSAPWDAGGI DGVTTLLSIG GWKNSQGFPE
LASDRESRET FASECVALLR DRDLDGIDID WEFPGPYGPD GLTSYPDDEE NFAALIEECR
RQFDAAAAED DTEYYLTAAL NHAESHLSGL PHDRLADALD YAKMMTYDMH SPVWVDETNH
NSPLYATSGA DSDDSIHNTL TYMREQGWPA EKLVMGLAFY GREFTGVEST ANDGLLQPFG
GSGGATGFAD IDQQFGGHTR YWDDEAKVPY KFDGSSLLSY DDEESVAVKA DYADERGHPI
MYWASGHDPN ETLIDAVNDA LGK
|
|---|
| |