Gene Hmuk_2721 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHmuk_2721 
Symbol 
ID8412272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalomicrobium mukohataei DSM 12286 
KingdomArchaea 
Replicon accessionNC_013202 
Strand
Start bp2606080 
End bp2607708 
Gene Length1629 bp 
Protein Length542 aa 
Translation table11 
GC content65% 
IMG OID645021067 
Producttype II secretion system protein E 
Protein accessionYP_003178534 
Protein GI257388761 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.261716 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGGCG ACGAGACAGA GCACGACGGA TCGAGTTCGA CGCCGCTCTC GGGCGTGCGC 
GACTGGCTCT CGCGGACGGC TCGCATGCTC AGCGGCGCGG CCGTCCCGTC GACGAACTAC
GATCCACAGC GCCACGGCAA GCTGGTCGAG TACACGGTGC CCGAGCAGTA CGACGAGATC
GACCGCTACT GGCTCAACGC ACCCTTTGCC TTCGCCTCGA TCAACCACGA TCCCGAGGCC
GACGAACAGT TCTACCAGGT CGTCGAACCC TCGCTCGACG AGTTCGAGCG CGATCTGCTC
GATCGGCTCT TCGAGGACAT CCGCGGTCCG CTCATCTACC GCGAGGACGT GAGCGACGAC
CCCGAGGCGG CGCTGGCCGC GGCGCTGCGG GACCGGATCG AGGAGTACGG CGTCGTCGTC
GAGCCCGAGA CGTTTTACCG GCTGCTGTAC TACCTCTATC GGTCCTTCCT GGGCTACGGC
CGGATCGACC CGCTGATGCA CGATCCCCAC ATCGAGGACA TCTCCTGTGA CGGGGCCGGG
CTACCGATCT TCGCGTATCA CGACGCGTAC ACCGACATCG AGACCAGCGT CGTCTACGAG
GAGGGCGAGC TGAACGACTT CGTGATCCAG CTCGCACAGC GGTCGGGCCG GCACGTCTCC
GTCTCTGATC CCGTCGTCTC GACGACGCTG CCGGACGGCT CGCGGATCGA GCTGGCACTC
GGCGAGGAGG TCACGCCCCG CGGCTCCGCG TTCACCATCC GGAAGTACGC CGACGAGCCG
TTCACGCCGA TCGATCTGCT GAACTACGGG ACCTTCTCCG TCGAGATGCT GGCCTACCTC
TGGCTGGCCA TCGAGTCCAA CAAGTCCCTG ATCTTCGCCG GGGGGACGGC GGCGGGCAAG
ACGACCTCGA TGAACGCCGT CTCGATGTTC ATTCCGCCCC GATCGAAGGT GTTGACCATC
GAGGACACCC GCGAACTGTC GCTGTACCAC GACAACTGGC TCTCGTCGGT GACCAGGGAG
CGACTCGACG AGTCGGACAT CACGATGTAC GACCTGTTGC GGTCGGCGCT GCGCCACCGG
CCGGAGTACA TCATCGTCGG CGAGGTCCGC GGCGAAGAGG CGATTACGCT CTTCCAGGCG
ATGAACACGG GGCACACGAC GTTCTCGACG ATGCACGCCG ACTCGGTCCA GACGGTGATC
AACCGGCTGG AAAACGAGCC GATCAACGTG CCGCGACCGA TGGTTCAGAG CCTCGACATC
CTCTGTGTGC AGGTGCTTGG CCGCTCGGGC GGGGAACGCG TCCGGCGAGC CAAGACCCTC
GCCGAGATCG AGGGGATCGA CCAGCGGACC GGGGAACTCG ACTACTCCAA CGCCTACGCC
TGGCAGGCCG ACGAGGACTA CTTCGAGGAC TCAAACAGCG ATCTGCTGGA CGAGATCAGG
CGCGAACGGG GCTGGAGCCA GTCGGAGTTG CTCCGGGAGA TGGACGACAG AAAGCGGTTC
CTGCGATACC TCCAGGCGGA GTCGATCACG GACTACCGGC GATTTACCGC GATGGTCAAC
AAGTACTACG CGGACAGCGA GACGGTGATG GAGCGGATCG ACCGGGCCGA CATCGACGCG
ACACCCTGA
 
Protein sequence
MAGDETEHDG SSSTPLSGVR DWLSRTARML SGAAVPSTNY DPQRHGKLVE YTVPEQYDEI 
DRYWLNAPFA FASINHDPEA DEQFYQVVEP SLDEFERDLL DRLFEDIRGP LIYREDVSDD
PEAALAAALR DRIEEYGVVV EPETFYRLLY YLYRSFLGYG RIDPLMHDPH IEDISCDGAG
LPIFAYHDAY TDIETSVVYE EGELNDFVIQ LAQRSGRHVS VSDPVVSTTL PDGSRIELAL
GEEVTPRGSA FTIRKYADEP FTPIDLLNYG TFSVEMLAYL WLAIESNKSL IFAGGTAAGK
TTSMNAVSMF IPPRSKVLTI EDTRELSLYH DNWLSSVTRE RLDESDITMY DLLRSALRHR
PEYIIVGEVR GEEAITLFQA MNTGHTTFST MHADSVQTVI NRLENEPINV PRPMVQSLDI
LCVQVLGRSG GERVRRAKTL AEIEGIDQRT GELDYSNAYA WQADEDYFED SNSDLLDEIR
RERGWSQSEL LREMDDRKRF LRYLQAESIT DYRRFTAMVN KYYADSETVM ERIDRADIDA
TP