| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_2505 |
|---|
| Symbol | |
|---|
| ID | 8412049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | - |
|---|
| Start bp | 2401522 |
|---|
| End bp | 2402559 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 645020846 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003178320 |
|---|
| Protein GI | 257388547 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.600696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCG ACACCGACGC CGTCGACGCG AGCGAGGATC CGGTCGGCTA CTTCCTGGAC
GATATGACCT ACCACGGAAA GACGGATCGA ACGCGGGAGT ACTACGAGCG CGTGCTCCGG
GAGTTCGAGT CCTTCCTCGA CAGCGGAGCC CGGCCGGTCG GACTGGCCGA AGCGACCCAT
CGAGACTGTA TGGCGTACGT CCACGGGCTC AGAGACGAGC AGAGTGACTC GACCGTCGCG
ACGTACGCCT CATACTTGCA TCGGTTCTAC GCCTACATGA ATCAGGTCGG AACCTTCGAG
GAGAATCCGA TGGCGCTGGT GATGGAGGAG ATGGACGAGA CGATCGACAC CGACCCCCAG
CGCCGAGAGA TCCCTATCCC GGCGATGCGA TCGTTCGTCC GGGACATCGG CCATCCCCTG
GAGCGAGCGG TCGTCGTGAC GCTGTTGAAG ACCGGGATGC GTGCGGGCGA GCTCTGTAAT
CTCGACGTTC GTGACCTGCA CCTGTCGGAG TGTGCGGTCA CGGCGGGGAC TGCGATTCGG
CCACAGCTCG AAGAGCGCCC CGATTCGCTG TTCGTCTCGG CCGAGCCGGC GCGTGGCGCG
GTCGTCAACG GCGAAGAGCG GACGGCCTCG AACAAGCGAA AACGGGACAC GACGGTCCCC
GTCGACGCGG AACTGGGCGA CGTACTCGAA CGGTGGCTGG CCGTCCGCCC AGATCCGAGA
TCGACCGCAG AGCCGCTGTT CACGTCGACG AGCGGAGACT GGGGGAAACG ACTCACGCCG
GACATGGTCC ACCACGTCGT CGAACGCCAC GCACGCGACC GGGGCTGGTA CCAGGACGGC
GGCGATGCGG CCCAGAACGT GACGCCGCAC TACTTCAGGC ACTTCTTCAC GACACACCTC
CGGGATCGAA CTGGTGATCG CGGGATCGTG AAGTACCTGC GCGGCGACGT GGCCCAGGAC
GTGATCGACA CGTACACCCA CGAGTGGGGC GACCGCGTTC GCACCGTCTA CGACGAGCAC
GTGTACGATA TCTGTTAG
|
|---|
| Protein sequence | MSSDTDAVDA SEDPVGYFLD DMTYHGKTDR TREYYERVLR EFESFLDSGA RPVGLAEATH
RDCMAYVHGL RDEQSDSTVA TYASYLHRFY AYMNQVGTFE ENPMALVMEE MDETIDTDPQ
RREIPIPAMR SFVRDIGHPL ERAVVVTLLK TGMRAGELCN LDVRDLHLSE CAVTAGTAIR
PQLEERPDSL FVSAEPARGA VVNGEERTAS NKRKRDTTVP VDAELGDVLE RWLAVRPDPR
STAEPLFTST SGDWGKRLTP DMVHHVVERH ARDRGWYQDG GDAAQNVTPH YFRHFFTTHL
RDRTGDRGIV KYLRGDVAQD VIDTYTHEWG DRVRTVYDEH VYDIC
|
|---|
| |