| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_2088 |
|---|
| Symbol | |
|---|
| ID | 8411626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | + |
|---|
| Start bp | 1997661 |
|---|
| End bp | 1999934 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 645020429 |
|---|
| Product | AAA family ATPase, CDC48 subfamily |
|---|
| Protein accession | YP_003177908 |
|---|
| Protein GI | 257388135 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family
[TIGR01243] AAA family ATPase, CDC48 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTA CGGTAAAACC CCTCAAGCAG AAAGACGCCG GACGCGGTCT CGCGGCCGTC
GACCGTGCAG CGATGGACGA GATGGACCTG GAGAACGGCG ACTACATTGT CATTGACGGC
GACGGCGGTC GCGCGGTCGC CCGTGTCTGG CCCGGATACC CTGAAGACAG CGGCAAGAAC
GTCGTCCGGA TCGACGGCCA GCTCCGACAG GAAGCCGGCG TCGGCATCGA CGACCAGATC
GAGGTCGAGA AGGCAGACGT ACAGGTCGCA AAGCAGGTCA CCGTCGCCCT GCCCCAGAAC
CTCCGGGTGC GGGGCAACGT CGGTCCGATG ATCCGCAACA ACCTCAGCGG CCAGGCGGTC
ACGCAGGGCC AGACGGTGCC AGTGAGCTTC GGGCTCGGTC CGCTTTCGAG CATGAGCGGC
CAGAAGATCC CGCTGCGGAT CGCCGAGACT GAACCCTCTG GGACGGTCGT GGTGACCGAC
CAGACCGACA TCGAAGTCAG CGAGAAGCCG GCCGAACAGA TCGCGGGCGA CGCCCCGACC
GAGGGCGGCG GCGAAGCCAC GCCGGACGTG GCCTACGAGG ACATCGGCGG CCTCGACAGC
GAACTCGAAC AGGTCCGCGA GATGATCGAG CTGCCGATGC GCCACCCCGA ACTGTTCCAG
CAGCTCGGCA TCGAGCCGCC GAAAGGCGTC CTCCTGCACG GGCCGCCGGG CACCGGGAAG
ACGCTGATGG CCAAGGCCGT CGCCAACGAG ATCGACGCCC ACTTCACGAC CATCAGCGGC
CCGGAGATCA TGTCGAAGTA CTACGGAGAG AGCGAAGAGC AGCTCCGCGA GGTCTTCGAG
GAGGCCGAGG AGAACGCCCC GGCCATCGTC TTCATCGACG AGATCGACTC GATCGCGCCA
AAGCGCGGCG AGACCCAGGG CGACGTGGAA CGCCGTGTCG TCGCACAGCT CCTCTCGCTG
ATGGACGGGC TCGACGAACG CGGTGACGTG ATCGTCATCG GCGCGACCAA CCGCGTGGAC
GCGATCGACC CCGCACTGCG CCGCGGCGGC CGCTTCGACC GCGAGATCGA GATCGGCGTG
CCGGACAAGG AGGGTCGAAA GGAGATCCTG CAGGTCCACA CCCGCGGGAT GCCCCTCTCC
GAGGACATCG ACCTCGAATC CTACGCCGAG AACACGCACG GCTTCGTCGG TGCGGACCTC
GCACAGCTGA CCAAGGAGGG CGCGATGAAC GCCCTGCGGC GCATCCGCCC GGACATCGAC
CTCGAATCCG ACGAGATCGA CGCCGAGGTG CTCGAATCGC TGGAGGTCTC CAAGCAGGAC
TTCAAAGAGG CGCTGAAGGG GATCGAGCCC AGCGCGCTCC GCGAGGTCTT CGTCGAAGTC
CCGGACACCT CCTGGGACTC GGTCGGCGGC CTCGAAGACA CCAAAGAGCG CCTGCGCGAG
ACGATCCAGT GGCCACTGGA GTACCCCAGC GTGTTCGAGC AGATGGACCT GCAGGCCGCC
AAGGGCGTCC TGCTCTACGG CCCGCCGGGC ACCGGGAAGA CGCTGCTGGC CAAAGCCGTC
GCCAACGAGG CCCAGTCGAA CTTCATCTCG ATCAAGGGCC CCGAACTGCT GAACAAGTTC
GTCGGCGAGT CCGAGAAGGG CGTGCGCGAA GTGTTCAGCA AGGCCCGAGA GAACGCCCCG
ACCGTCGTCT TCTTCGACGA GATCGACTCG ATCGCGGCCG AACGCGGCTC GGGCGGCGGC
GACTCGCAGG TCGGCGAACG CGTCGTCTCC CAGCTCCTGA CCGAACTGGA CGGGCTCGAA
GCGATGGAGG ACGTGGTCGT GATCGCCACG ACCAACCGAC CGGACCTCAT CGACTCGGCG
CTGATCCGGC CCGGACGACT GGACCGCCAC GTCCACGTCC CGGTCCCCGA CGAGGACGCT
CGCCGGGCGA TCTTCCAGGT CCACACCCGC GGCAAGCCAC TCGCCGACGG CGTCGACCTC
GATCAGCTCG CACGGAGGAC CGAGGGATAC GTCGGTGCCG ACATCGAAGC AGTCGCCCGC
GAGGCCTCGA TGGCCGCGAC CCGGGAGTTC ATCAACAGCG TCGACCCCGA CGACATCGAC
GACTCCGTCA GCAACGTCCG CATCACGATG GACCACTTCG AGCAGGCGCT CGACGAAGTC
GGGCCGAGCG TCGACGAGGA CGTGCGGGAA CGCTACGACG AGATCGAAGA ACGGTTCGAT
CACGCCGAGG CGGAACTGGA CGACGGCGAG ACGGCCTCGC GAACCTTCCA GTAG
|
|---|
| Protein sequence | MKLTVKPLKQ KDAGRGLAAV DRAAMDEMDL ENGDYIVIDG DGGRAVARVW PGYPEDSGKN
VVRIDGQLRQ EAGVGIDDQI EVEKADVQVA KQVTVALPQN LRVRGNVGPM IRNNLSGQAV
TQGQTVPVSF GLGPLSSMSG QKIPLRIAET EPSGTVVVTD QTDIEVSEKP AEQIAGDAPT
EGGGEATPDV AYEDIGGLDS ELEQVREMIE LPMRHPELFQ QLGIEPPKGV LLHGPPGTGK
TLMAKAVANE IDAHFTTISG PEIMSKYYGE SEEQLREVFE EAEENAPAIV FIDEIDSIAP
KRGETQGDVE RRVVAQLLSL MDGLDERGDV IVIGATNRVD AIDPALRRGG RFDREIEIGV
PDKEGRKEIL QVHTRGMPLS EDIDLESYAE NTHGFVGADL AQLTKEGAMN ALRRIRPDID
LESDEIDAEV LESLEVSKQD FKEALKGIEP SALREVFVEV PDTSWDSVGG LEDTKERLRE
TIQWPLEYPS VFEQMDLQAA KGVLLYGPPG TGKTLLAKAV ANEAQSNFIS IKGPELLNKF
VGESEKGVRE VFSKARENAP TVVFFDEIDS IAAERGSGGG DSQVGERVVS QLLTELDGLE
AMEDVVVIAT TNRPDLIDSA LIRPGRLDRH VHVPVPDEDA RRAIFQVHTR GKPLADGVDL
DQLARRTEGY VGADIEAVAR EASMAATREF INSVDPDDID DSVSNVRITM DHFEQALDEV
GPSVDEDVRE RYDEIEERFD HAEAELDDGE TASRTFQ
|
|---|
| |