| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_1908 |
|---|
| Symbol | |
|---|
| ID | 8411435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | + |
|---|
| Start bp | 1818388 |
|---|
| End bp | 1818879 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645020238 |
|---|
| Product | proteasome Rpn11 subunit JAMM motif protein |
|---|
| Protein accession | YP_003177728 |
|---|
| Protein GI | 257387955 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1310] Predicted metal-dependent protease of the PAD1/JAB1 superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.117708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCTGT TTCGCTCGGG CGGGATCCTC GGCATCGCCG ACTCCGCGCT CGAGTTCGCC
CTCGCGGCGT CGGAGGAGAG CCACCCCAAC GAGTACATGG GGATCCTGCG CGGCGAGGAC
GCACGCACAC TCGGACTGGA CGAGGACGGC ACGGTACTGT CCGACGTGCT CGTGATCCCC
GGAACGGAAT CGAACCCGGT GAGCGCGACG CTCAAGACGA GCATGGTACC CAACGACCTG
CGGGCCGCGG GATCGATCCA CTCCCACCCC AACGGCGTGC TCAAGCCGAG CGACGCCGAC
CTGCAGACGT TCGGCCGCGG CGACGTACAC ATCATCGTCG GCGCACCCTA CGGGAAAGAC
GACTGGCAGG CGTTCGACAA CGAGGGCCAG CCGATCGAAC TCGACGTGCT GGACGTGGAC
CCGCCAGAGG AGGAGTTCTT CGATTTCACC CAGGCGGACA TCGACGCCGA GTTGCGGGAG
GACGAATGGT GA
|
|---|
| Protein sequence | MGLFRSGGIL GIADSALEFA LAASEESHPN EYMGILRGED ARTLGLDEDG TVLSDVLVIP
GTESNPVSAT LKTSMVPNDL RAAGSIHSHP NGVLKPSDAD LQTFGRGDVH IIVGAPYGKD
DWQAFDNEGQ PIELDVLDVD PPEEEFFDFT QADIDAELRE DEW
|
|---|
| |