| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_1322 |
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| Symbol | secD |
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| ID | 8410842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halomicrobium mukohataei DSM 12286 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013202 |
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| Strand | + |
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| Start bp | 1248559 |
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| End bp | 1250199 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 645019653 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_003177150 |
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| Protein GI | 257387377 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.776168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGGC TCCGCGACAA CTGGCGGATC ATCCTGCTGG TCGTGCTCGC CCTCGGGAGT
ACCGTGACGC TACTGGTCCC CGGCGCGACG GTCGCGACCG GCGACAACGC GACGGCCCAG
ACCGACGGCG CGAACGCCTC CGCGGCGGGC ATCACGAACC TCCAGTACGG GATTCAACTC
GACGGCGGTT CGCGCATCCG AGCACCGATC GTCGGGATCA CCGCCGAAAA CGTCGACATC
CAGCCCGTCG GCCGTGGTGA CGAGACCAAC GAGACGATCG CCATCGAGGA CGAACTCGTC
TCGCAACTCG GCGTCGATCC CGTCGACGTG AACGCGCGCG CACCCAACGA GCCAAACGCC
GACGGCACCG TCGAGGTGTA CACCGAGAAC GTCACGCAGG CCGAACTCGC CGCCGCCCTC
CAAGAGCAGG GCTACGACGT GTCCGAGAGC GACGTTCGCG ACGGCGTGAC CCGAGCGACC
CGCGACGAGA TGGTCGAAGT GATAGACGAG AAGCTCTCCC AGTCCGCGCT CAGCGGCGGG
AGCGTCCAGT CGGCCCAGTC GGCCACCGGA CAGAACTTCG TCGTCATCGA GGCACCGGGC
CGCGACATCG ACGAGCTCCG CTCGATCGTC GCCAACCGCG GGATCGTCCG CGTGTACGGT
GGCTACGCCG CCGACAACGG AACGTTCGTC CGCCAGCAGA TCGTCAGCCG GGAGGACATC
GACGGCATCG GGAACGCCCG AAAGGTCGAC GGGCGACAGG GGTACCGGGT CAGCGTCACG
ATTCGAGAAG ACGCGGTCGA CCAGTTCCTC GACGGTGTTC GGGCGACCGG ACTCGACGAG
CCAAACACCG CACGCGGGGC GATCAGCTGC GAGTACAACG CCGAGAACCC GAACCAGAGC
TCGGGCAAGT GTCTGATCGC GTCGCTGAAC AACGAGGTCG TCACCGCCAA GGGCGTCTCG
CCGGGGCTGG TCCAGCTCTT TGCCGACGGG AGTTTCGCGA ACGATCCGAC CTTCGTCATC
GAGACCAACA CCCGCGAGGA AGCGCGCAAC ATCGAGCTCA GCCTGAAGGC GGGCCAGCCA
CTGCCCGCGC CGCTCGACTT CCAGAACGCA CAGACCACCT CGCTGGAGCC GGCACTGGCA
GACCAGTTCA AGACGAACTC GCTGATCACG GGTATCATCG CCGTCCTCGC GGTGTCGATC
GCCGTCTACC TGCGCTACGG CGATCCCCGC GTGGCGGTGC CGATGATCGT CACCGCACTC
TCCGAGGTGT TGCTCCTGCT CGGGTTCGTC TCGGCCATCC AGTTCCCGCT GGACCTGTCA
CACATCGCCG GGTTCATCGC GGTGATCGGG ACGGGGGTGG ACGACCTGAT CATCATCGCC
GACGAGATCC TCCAACGCGA GGGGGTCGCC ACGGGCCGAG TGTTCCAGAA CCGCTTCCGC
AAGGCGTTCT GGGTGATCGG AGCCGCCGCC GCGACGACGA TCATCGCCAT GAGCCCGCTG
ACGGTGCTCG GTCTCGGTGA TCTCACCGGG TTCGCCATCA TCACCATCGT CGGCGTCCTC
ATCGGCGTCC TGATCACGCG GCCGGCCTAC GGTGACATCC TCCGCCGGCT GGTGCTGGAC
GAGGAAGAGC GAAGCGAGTA G
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| Protein sequence | MSGLRDNWRI ILLVVLALGS TVTLLVPGAT VATGDNATAQ TDGANASAAG ITNLQYGIQL
DGGSRIRAPI VGITAENVDI QPVGRGDETN ETIAIEDELV SQLGVDPVDV NARAPNEPNA
DGTVEVYTEN VTQAELAAAL QEQGYDVSES DVRDGVTRAT RDEMVEVIDE KLSQSALSGG
SVQSAQSATG QNFVVIEAPG RDIDELRSIV ANRGIVRVYG GYAADNGTFV RQQIVSREDI
DGIGNARKVD GRQGYRVSVT IREDAVDQFL DGVRATGLDE PNTARGAISC EYNAENPNQS
SGKCLIASLN NEVVTAKGVS PGLVQLFADG SFANDPTFVI ETNTREEARN IELSLKAGQP
LPAPLDFQNA QTTSLEPALA DQFKTNSLIT GIIAVLAVSI AVYLRYGDPR VAVPMIVTAL
SEVLLLLGFV SAIQFPLDLS HIAGFIAVIG TGVDDLIIIA DEILQREGVA TGRVFQNRFR
KAFWVIGAAA ATTIIAMSPL TVLGLGDLTG FAIITIVGVL IGVLITRPAY GDILRRLVLD
EEERSE
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