| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_0112 |
|---|
| Symbol | |
|---|
| ID | 8409609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halomicrobium mukohataei DSM 12286 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013202 |
|---|
| Strand | - |
|---|
| Start bp | 111154 |
|---|
| End bp | 112668 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 645018437 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_003175957 |
|---|
| Protein GI | 257386184 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.675918 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGCCC GCGAAGACCC CGTCGTCTCG GTCCAGTCGC TGAAGACCTA CTACCACGAC
GACAGCATCG TCGGCGCGAA ACCGCCGGTG AGAGCCGTCG ACGGTATCGA CCTCGACATC
CGCGAAGGCG AGACGGTCGG GCTCGTCGGC GAGTCAGGTA GCGGGAAGAC GACGCTCGGG
CGGACGATCA TCGGGCTCGC GGACGCGACC GACGGCGTCG TCGAGGCCGA CGGACAGGAC
GTGACCGAGT TCGACGCCGA ACAGGCCCGC GACTGGCAGC GCCGCGTGGG CATGGTGTTT
CAGGACCCCG AGGAGAGTCT CAACGACCGA ATGACGATCG GCGAGATCGT CCAGGAACCC
CTGAAGGCAC ACGACTGGCC GGTCCTGACT GTCGCCGTCG AGGGCGATGC GACGGTCCGG
GGCAGTGGTG TCAGACCGGC CGAGCCGGAC GAGACGGTCG ATCTCACGGT CGGCCTCGAC
GGCGACGTGA CGGTTCGGGA CGAACTGCCG CTGTCGGCCG ATGCGGTCAC CGCCGCCGTC
GACCGGAGCG GCGACGCGCC GACGGTCGAC GTCACCGTCG AGAAGTCTCG TGCGGAGATC
CGGCGCGACC GGGCCTTCGA CCTCCTCGAC CGGGTCGGGC TCTCCGAGGA GCACTTCTAC
CGGTACCCCC ACCAGTTCTC CGGGGGGCAG CGCCAGCGTA TCGGCATCGC CCGCGCGCTC
GCGCTCGAAC CGGAGTTCGT CGTCCTCGAC GAACCGGTGT CGGCACTGGA CGTGTCAGTC
CAGGCCCGGA TCATCAACCT CCTCGAAGAC CTGCAAGACG AGATGGGGCT GACCTACCTC
TTTATCGCCC ACGACCTCTC GGTCGTGCGC CACATCGCCG ATCGCGTCGC GGTGATGTAC
CTCGGCAACG TCGTCGAACT GGGGCCCACG GAGTCGGTCT ACGCCGACCC CCACCACCCC
TACACCGTCT CCTTGCTGTC TGCTATTCCG GGGAGTGGTT CCCCGTGGAC CGGCGAGCGA
ATCACGCTGC GCGGCTCGCC GCCGAACCCC CGAGATCCGC CCGCCGGCTG TCCGTTCGCG
ACGCGGTGTC CGGCGAAGAT CCGGCCCGAC GACTACGACC TGCCCGAGCG GACCTGGCGC
GCCCTGGACG AACTCCGCGT CGTCTTCAGG ACGCGAGCCC GCGCCGAGGC GTCCGCGGCC
GAGACGATCA AACGACTGAT CGGGCTCGAC GTGGCCGGTC AGGACCTCCG GGAGACCGTC
TCCGATCTGC TGGCGGACCA CGACCTCCCA CCGGCGGCCC AGTCGACCGT CGACGCGGCG
GTGGAGCTGG CTGCCGGCGG CGACGACGAC GCGGCGGCCG AACAGCTCCG AGAAGCCTTC
GGGTCGCGGT GTGACCGCGA ACACCCCGAG CCCTACGACG GCGGCGAGGA TCGAACGAGC
CAGTGTCTCC GCCAGGAGGC GGAGTACGAC GGCGTCGCCG AGACGATCCG GGCCCGCCAG
GAGGACGAGC CGTGA
|
|---|
| Protein sequence | MTAREDPVVS VQSLKTYYHD DSIVGAKPPV RAVDGIDLDI REGETVGLVG ESGSGKTTLG
RTIIGLADAT DGVVEADGQD VTEFDAEQAR DWQRRVGMVF QDPEESLNDR MTIGEIVQEP
LKAHDWPVLT VAVEGDATVR GSGVRPAEPD ETVDLTVGLD GDVTVRDELP LSADAVTAAV
DRSGDAPTVD VTVEKSRAEI RRDRAFDLLD RVGLSEEHFY RYPHQFSGGQ RQRIGIARAL
ALEPEFVVLD EPVSALDVSV QARIINLLED LQDEMGLTYL FIAHDLSVVR HIADRVAVMY
LGNVVELGPT ESVYADPHHP YTVSLLSAIP GSGSPWTGER ITLRGSPPNP RDPPAGCPFA
TRCPAKIRPD DYDLPERTWR ALDELRVVFR TRARAEASAA ETIKRLIGLD VAGQDLRETV
SDLLADHDLP PAAQSTVDAA VELAAGGDDD AAAEQLREAF GSRCDREHPE PYDGGEDRTS
QCLRQEAEYD GVAETIRARQ EDEP
|
|---|
| |