Gene Hmuk_0048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHmuk_0048 
Symbol 
ID8409545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalomicrobium mukohataei DSM 12286 
KingdomArchaea 
Replicon accessionNC_013202 
Strand
Start bp43983 
End bp45149 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content68% 
IMG OID645018386 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003175906 
Protein GI257386133 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.575298 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCGTA CTGATCGCGA CGACGATTCC GGCGAGACAC CCGGGTCGGA CGCCGACTTC 
GAGGCCGTCG GCGACGCGCT TGGCACCCCC GAGCGGTTCA CCGACGAGGG CCGCGACCCC
GGTCGTGCTC CGATCTCGGG CCACGCCCGC AACGGCCGCG TCGCGGCCGA CGGGGGCTCC
TCGTCGGTCT CGGAGTTCCA GCAGATGGCC GACGTGTCGA TGACCGACGC CGAACGGCGG
CGACAGTGGA TCGACGAGAA GCTCCTCGCG CCGGCCCGGA TCGTCTGGAG CGACTGGCGC
GCACGCACGG GCGCGCTCGT GGTCGTCTTC TACGTACTGA TGGCGACGGT CGGCCTCGCG
ATCGTCACCG AACCGTCGCC CAACCAGGGC GGCTACCTGG TCGGGGCCTT CCGGACGCTG
GAGTTCCCGC TGGGAACGAC CGCGTCCGGC GTCAGTCTGC TCTCCCAGAC CGTCTACGCG
ACGCCGTCGA TGCTGACGAT GATCGCGTCG GGTGCCGTCT TCACGGTCTG TCTCGGGACG
GCCTTCGGCA CCATCGCGGG CTACAAGGGC GGCACCGTCG ATCGAGTGTT GATGATCGTC
ACGGACATCA TGATGACCAT TCCGGGGCTG CCCCTGACGA TCGTGCTGGC CTCGGCGCTC
CAGATCGACG GGAACCCGGT GATCATCGGG ATCCTGATCA CGATCAACGC CTGGGCGGGG
CTCGCACGCG CCATCCGATC GCAGGTGCTG ACCCTGCGCG ACGCCGAGTA CGTCGAAGCG
TCGCGCATCA TGGGGATGGA GACCTCGACG ATCATCTCCG GGGACATCAT TCCGAACCTG
ATGCCCTACA TTACGATGAA CTTCGTCCAG CAGGCCCGGG CCGTCATCTT CGGTTCCGTC
GGCCTGTACT TCCTCGGCGT CCTGCCCTAC ACCAGCGTCA ACTGGGGCGT GATGATGAAC
GCCGCCGTCA ACCGCGCCGG TGCCACGTCC TCACCCGCGG CCTTCCACTG GCTGCTGGTG
CCGATGGTGA CGATCATCAT CCTCGCGCTG GGCCTGACGC TGCTGGCCCA GGGGGCCGAC
CGGATCTTCA ATCCGCGGGT CCGTGCCCGC CACGCCGAGA CCGTCGCGAG CGACGGGGAC
GACGACGCGA CCACGGGGGA GATCTGA
 
Protein sequence
MSRTDRDDDS GETPGSDADF EAVGDALGTP ERFTDEGRDP GRAPISGHAR NGRVAADGGS 
SSVSEFQQMA DVSMTDAERR RQWIDEKLLA PARIVWSDWR ARTGALVVVF YVLMATVGLA
IVTEPSPNQG GYLVGAFRTL EFPLGTTASG VSLLSQTVYA TPSMLTMIAS GAVFTVCLGT
AFGTIAGYKG GTVDRVLMIV TDIMMTIPGL PLTIVLASAL QIDGNPVIIG ILITINAWAG
LARAIRSQVL TLRDAEYVEA SRIMGMETST IISGDIIPNL MPYITMNFVQ QARAVIFGSV
GLYFLGVLPY TSVNWGVMMN AAVNRAGATS SPAAFHWLLV PMVTIIILAL GLTLLAQGAD
RIFNPRVRAR HAETVASDGD DDATTGEI