| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hmuk_0017 |
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| Symbol | truD |
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| ID | 8409513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halomicrobium mukohataei DSM 12286 |
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| Kingdom | Archaea |
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| Replicon accession | NC_013202 |
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| Strand | - |
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| Start bp | 12890 |
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| End bp | 14239 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 645018354 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_003175875 |
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| Protein GI | 257386102 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCAG CCCAGCCGAT CGAGCAGGCC GTCGGAATGC GCTACTACGT CAGCGACGGC
GACGGCATCG GTGGCCGACT CCGTGCCTCG CCCGAGGACT TCGCGGTCCG GGAACTGGAG
GCGTTCGAGG CCGAACCCGC CGACGCCGAC AGCGGCGCGT ACGCTCACCT CGTCGTGCGC
GCGACGCTGC ACAACTGGGA CACGAACGAC TTCGCGTCGG CGCTGTCGGA TCGTCTCGGC
ATCTCTCGGG AGCGCGTCTC GTGGGCGGGG ACGAAAGACA AGCGGGCCGT GACGACCCAG
CTGTTCTCGA TCGCCGACGC GGACGCGGCC GACGTGCCCG AGATCGACGG CGCGGAGATC
GACGTCGTCG GGCGGGCGGG ACGACCGGTG CTGTTCGGCG ACCTCGCCGG CAACGCCTTC
GAGATCATCG TCCGGGAGGT GGACCGCCCC GACGGCGTCG ACGGGATCAC CGAGCAACTG
CGCGAGTTCG CCGGCAGCGC CGACGCCGCC GACGAGCCGA CGGTCGCGGT GCCGAACTAC
TTCGGTCAGC AACGCTTCGG CAGCAAGCGC CCGATCACCC ACGAGGTCGG GCTGGCGATC
GTCCGGAACG ACTGGGAGGG CGCGGTGATG GCCTACCTCG GGAACCCAAA CGAGCGCGAG
CCCGAGGCGA CACAGGCGGC ACGGGCCTAC GTCGAAGAGA CCCACGACTG GGAGGGGGCA
CTGGAGCGGT TCCCGCGAGC GCTGGGGTAC GAGCGGGCGC TCTGTCACAG TCTGGCCGAC
GCCGACGACG CCTCCCCAGC GGCGTTCCGG AGCGCGCTGG AGACGCTGCC GACGAACCTC
CAGACGCTCT TCGTCAACGC CGCCCAGTCG TACCTGTTCA ACCGCGTCCT CTCGGAACGC
CTCGACCGCG GGCTTCCCTT CGACCGCCCC GTCGCTGGCG ACGTGGTCTG TTTCGCCGAT
AGCGACGCGC CAGACGGCCT CCCGCTCCCC GACACCGACC GCACACAGCG GGTCACTGCC
GGGCGCGTCG ACACCGTCGA GCGACACTGC GAGCGGGGCC GGGCGTTCGT CACTGCTCCC
CTCGTCGGGA CCGAGACGGA GCTGGCAGAG GGCGAACCCG GCGAGATCGA ACGCGCGGTG
CTCGCCGACG CCGAACTCGA ACCGACCGAC TTCGCGCTCC CCGGTGAGTT CGACTCGTCG
GGAACCCGGC GTGCGGTTCA GGTCCGGAGC CAGATCGACG TCCGGCGACG CGACGGGGAC
GCGGTCGAGT TCGCGTTCTC GCTGCCGAAA GGCAGCTACG CGACGGTCCT GCTCCGTGAG
TACCTGAAGC GCGATCCGGC CCAGTTGTAA
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| Protein sequence | MRPAQPIEQA VGMRYYVSDG DGIGGRLRAS PEDFAVRELE AFEAEPADAD SGAYAHLVVR
ATLHNWDTND FASALSDRLG ISRERVSWAG TKDKRAVTTQ LFSIADADAA DVPEIDGAEI
DVVGRAGRPV LFGDLAGNAF EIIVREVDRP DGVDGITEQL REFAGSADAA DEPTVAVPNY
FGQQRFGSKR PITHEVGLAI VRNDWEGAVM AYLGNPNERE PEATQAARAY VEETHDWEGA
LERFPRALGY ERALCHSLAD ADDASPAAFR SALETLPTNL QTLFVNAAQS YLFNRVLSER
LDRGLPFDRP VAGDVVCFAD SDAPDGLPLP DTDRTQRVTA GRVDTVERHC ERGRAFVTAP
LVGTETELAE GEPGEIERAV LADAELEPTD FALPGEFDSS GTRRAVQVRS QIDVRRRDGD
AVEFAFSLPK GSYATVLLRE YLKRDPAQL
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