| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2334 |
|---|
| Symbol | |
|---|
| ID | 8381490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2497496 |
|---|
| End bp | 2498830 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645005097 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003162272 |
|---|
| Protein GI | 256833545 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.74243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGTG GAAGCATCGA AATAGGAGAC AGCGCACTAG GCACCCGAAA GCGCATCTAC
GTCTCACACA AAGACGAAGA CATAGCGTGG GACAAATTCC AGGTGCGACG CAAGCGGCTG
ATGTTGGAAG GTCGCGCCGC TGCGAAATCC CGCTCGAAGA CAGTCGGGGC GTGGTTGAAG
GAATGGCTCG AGGCAGAGCA GACCCGCGTG CGCCCTAAGA CCTTCAACGG GACCCGCACC
TACGTCACGC GGTGGATGAT CCCCATCGTC GGGAGGGTGC AGCTTCAAGA CCTCGAGGCG
AGTCACGCCA AAGCAATAGT GAAAGCGATG CTGGATGGTG GGAAGAGCAC GACCTACGCG
GGGACTGTGC TTGGGCAATT TCAAAGCGCG CTCAGGGCAG CAATCGCAGA AGGCTACCGT
GTCCCAGACT CAGTGCTCCT TGTCAAGAAG CCCGCGAAAT CAGCGCACGA CCGGCGCGAC
CTCCCACTAG AAGACGCACT CAAAGTCGTG CGACACCTCG GCAGGCTAGT CGACGCCGAC
CCCCAGAAAG CAGGATTCGC TTCCAGGTGG CTCGCCGCTT TTCTTGAGGG CATGCGTCAA
GGCGAAGCGC TCGGCATGAC ATGGGACCGC GTACACCTCG AAGAATCCTA CTTCACGATC
TCCTGGCAGC TCCAAAACCT CCCCTACAAT GTGGCCTACG ACCAGACCAG CGGCTTCCGC
GTCCCCCACG GCCACAAGTC CCAGCAGCTA TGGGGCTCCT TCCACCTCGT AGAGCTCAAA
TCCGACTCAG GCTACCGACT CGCGCCCATG ATCCCCGTGC TCGCGAAGAT GCTCGAGGTA
TGGAAAGAGC ACTGCCCGCG CAGTGAAGGT AATCTAGTGT GGCCTAGAGC GACAGGCGAG
CCGCAAAACA TGGCCGCCGA CCGGGCGGAG TGGGCCGCGA TCCAAGAAGA GCTTGGTATC
TGGAAGACCC CACCCACGAT TGTGGACGGC AAAGAAGTCG GTGGGCAAAG GTATGTCATC
CACGAGATAC GCCACACCAC CGCGAGTCTC CTGCTTCATA TGCGGATTGA CCCCAAGACA
ATCAAGGAGA TTATGGGGCA CTCCGAGATT GTCACGACCC AGCAGTATCA GCATGTGAGT
ATGGAGCTTG CCCGTGAGGC GATGGAGGCC GTGGGGCAAA GGCTTCAGCT GATGGGGGCA
GCTCCGGGTG TGGAGGTCGC TCCAGCTCCG ATGCCAGGTG TAAGTGTGGA TGATCTGCTG
GGCGCCTTTG CGGCTTTGGA GCCTGCTGAT AAGTCGATTT TCTTGGCGAG GGCTGCGGTT
TTACTTGCTG GGTGA
|
|---|
| Protein sequence | MWRGSIEIGD SALGTRKRIY VSHKDEDIAW DKFQVRRKRL MLEGRAAAKS RSKTVGAWLK
EWLEAEQTRV RPKTFNGTRT YVTRWMIPIV GRVQLQDLEA SHAKAIVKAM LDGGKSTTYA
GTVLGQFQSA LRAAIAEGYR VPDSVLLVKK PAKSAHDRRD LPLEDALKVV RHLGRLVDAD
PQKAGFASRW LAAFLEGMRQ GEALGMTWDR VHLEESYFTI SWQLQNLPYN VAYDQTSGFR
VPHGHKSQQL WGSFHLVELK SDSGYRLAPM IPVLAKMLEV WKEHCPRSEG NLVWPRATGE
PQNMAADRAE WAAIQEELGI WKTPPTIVDG KEVGGQRYVI HEIRHTTASL LLHMRIDPKT
IKEIMGHSEI VTTQQYQHVS MELAREAMEA VGQRLQLMGA APGVEVAPAP MPGVSVDDLL
GAFAALEPAD KSIFLARAAV LLAG
|
|---|
| |