| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2223 |
|---|
| Symbol | |
|---|
| ID | 8381381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2408568 |
|---|
| End bp | 2409818 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645004983 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_003162163 |
|---|
| Protein GI | 256833436 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.92852 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.508366 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGTGA TACTCCTTCT TGGTGGGGTC ATTGGTGTCG CGGCGTGGTG GGGGAACCGG
CATGGTGTGC ACCGCCGGGT ACGGGTGGTC GCTGTGGGGG CTGTGCACGC CGGTACTTCT
CGCCCCCACC CTCTGTTGGT GCGGGTATTT CCCACCTGGT TGGGGCCACG GGGGAACGCC
CCGCGGGTGC CGCTACTGCC GCGTGTTGTG TCGCATTTGC GCAGCGGCCA ACTGCCTAGA
ACTGTGTGGG ACTCTCATGG GGTGCTCACC GTGGCAGGAA TCCCGGTGGT CCAGGCTCTG
GCACATCGGC TTGCAGAGGA CGACACTGCC CAGCGAACCG TTCGCGTCCC GCCCCGTGAC
CGCTGCCACA GTTTCCAGCC TGCAGATGCG TCAGCCGAGC AGGCAGCCCG CGCGGTTGTC
GCTGCCTGCC GCCTGAGTTC TGTCACAGGA CTGTCGCTCG CCACCGTTCT TGACACAACC
GCTGCAGCGC TCCGTCGCGC CACAGACGCC CGCAGCGCCC GGACCACTGC CACAGCAGGC
GCTGAAGCGA CTGCCCGCCT CTTACTGTTT CTGCCCCTGT TTGGTCTTCT CATGGGGTAT
GCGCTGGGTG CACAACCCCT GACCTGGCTC ACCCGCACAC CGCTTGGCTG GGGCAGCCTG
ATCGCAGCGA TCGTGTTCCT CCTGGCCGGG CGAGCATGGG TGGCCCGGCT CCTTGCGAGC
GCGACCACCA CGGAGCGGGC ACCCACGTCC CGAGGACCCA CGTCCCGGGG GAGCCGGACC
CGAGCACGCG CCGTGGCCAA CCCGCCACCA TCACCCCCAC CCATCGATGT CACCATCACA
CTAGACCTGC TCACCACTGT GATGAGCGCA GGTCATTCCA TTGACTCGGC ACTGGATACC
GTGGCAACCC ACGTGCCTGA TCTCGAGGTG GCTCAGCTTG GTGTCGTGGC GCGCCTCCTG
CTCCTTGGCG CAAGCTGGCA GCGTGCCTGG GCGAACGCTC CTGCACGGTA TGCGTTTCTT
GGTGAGGCGC TCGCTGACGG GTGGCAGCGG GGGAGTTCGG TGATTCCCAC GCTCATTGCG
ACCCGTGATG CGTGGATTGC ACAGGAGCAA GCCGATGCAC ACCAGCGTGC TCAGCGATTA
TCCAGCATGA TCGTGGTCCC GGTGGGGGTG TGTTACCTGC CTGCGTTTGT TCTGGTGGGT
GTGGTTCCCA CAGCAGTGTC GTTGGGTGTC GCCACCTTCT TTGGTGGGTA A
|
|---|
| Protein sequence | MVVILLLGGV IGVAAWWGNR HGVHRRVRVV AVGAVHAGTS RPHPLLVRVF PTWLGPRGNA
PRVPLLPRVV SHLRSGQLPR TVWDSHGVLT VAGIPVVQAL AHRLAEDDTA QRTVRVPPRD
RCHSFQPADA SAEQAARAVV AACRLSSVTG LSLATVLDTT AAALRRATDA RSARTTATAG
AEATARLLLF LPLFGLLMGY ALGAQPLTWL TRTPLGWGSL IAAIVFLLAG RAWVARLLAS
ATTTERAPTS RGPTSRGSRT RARAVANPPP SPPPIDVTIT LDLLTTVMSA GHSIDSALDT
VATHVPDLEV AQLGVVARLL LLGASWQRAW ANAPARYAFL GEALADGWQR GSSVIPTLIA
TRDAWIAQEQ ADAHQRAQRL SSMIVVPVGV CYLPAFVLVG VVPTAVSLGV ATFFGG
|
|---|
| |