| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_2197 |
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| Symbol | |
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| ID | 8381355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 2370472 |
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| End bp | 2373243 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645004951 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003162137 |
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| Protein GI | 256833410 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.777958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAG GACGAAAACT CGTCATCGTG GAGTCACCAG CGAAGGCGCG CACTATTTCC
GCCTATCTGG GTGCTGATTT TGATGTTGAA GCGAGTGTGG GGCATATTCG CGACCTGCCA
CAGCCTAGTG AACTTCCTGC TGAGATGAAG AAGTCGGGGT ATGGCAAGTT CGCTGTTGAT
GTGGACAATG GGTTCGCCCC TTATTACGAG GTGTATCCGG ATAAAAAGAA GAAAGTCACG
GAACTGCGCC GGCTGCTCAA AGATGCGGAT GAACTGTATC TTGCTACCGA TGAGGACCGG
GAAGGTGAAG CGATTGCGTG GCACCTTCTT GAGGCGTTGA AACCGAAGGT GCCGGTCAAA
CGTATGGTGT TTCACGAAAT CACCCGGGAG GCAATCCAGC GTGCGTTGAC AACGACCCGT
GACCTTGATG AGCGGCTTGT CGATGCGCAA GAAACACGCC GTATTTTGGA CCGGTTGTAC
GGGTATGAAG TATCTCCGGT GTTGTGGCGT AAAGTTCGGC AAGGGTTGTC CGCCGGGCGC
GTACAGTCGG TGGCTACTCG CCTGGTCGTG GAGCGGGAAC GCGAGCGGAT GGCGTTTGTA
CCTGCGAGCT ATTGGGATGT GACTGCGCAG TTCGAAGCGA CCCAAGGGCA AGACGCAGGA
GGTACCTTCC AGGCTCGGCT GACCCATGTG GATGGGACAC GGGTCGCCAC CGGCCGTGAC
TTCACTGACC GCGGTGAACT CAAGGCGCGT GACGTGGTGC ACCTGACGGA AGATGCTGCC
ACGACGTTGG CTCAGTCGCT GACTGACGCT CCAGCGACCG TTGCGTCACT GGACACGAAA
CCCTATACCC GCCGCCCAGC GGCTCCCTTC ACCACGTCAA CGTTGCAGCA GGAAGCGTCG
CGAAAACTGC GAATGTCCTC AAAAACAGCG ATGCGGGTGG CACAAACGCT GTACGAAAAC
GGGTATATCA CCTACATGCG TACCGACTCG CCGGCGTTAT CAGCTCAAGC GATCAGTGCT
GCGCGAAGCC AAGCAGCAGA CTTGTACGGT ACTGAGTTTG TGCCCGAAAA ACCACGCCAC
TATGCGTCAA AGTCTAAAGG TGCTCAGGAA GCGCACGAAG CGATCCGCCC TGCGGGGGAC
ACGTTCCGCA CGCCAGCCCA GGTGGCCAAT GTGTTGAGTG GAGACCAGTT CCGGCTCTAT
GAACTCATTT GGAAGCGCAC GGTGGCCTCC CAGATGGCTG ATGCGCGTGG TTCGACTGCG
TCTGTGCGTA TTGATGTGCC GGGGCAGGTT GATGGACAAA CAACCACCGC CACATTTTCC
GCATCGGGTA CGGTCATCAC CTTCCGTGGG TTCCTTGCAG CCTACGAGGA AGGTCGCGAT
GTTGACCGTT ATGATGACGG GTCGCAATCT GATGGGCGTC TTCCTCACAT GGTGGAAGGT
GACCCGTTGG CGTCACGTGA CGTTTCTGCT GACGGTCACA CGACAACCCC ACCACCGCGG
TTTACCGAAG CGTCCTTGGT GAAAGCACTG GAAGAACGGG GTATTGGACG CCCCTCGACC
TACGCATCGA CTATTTCCAC CATCCAGGAC CGTGGCTATG TGAACAATCG AGGGCAGGCG
CTTGTCCCCT CGTGGTTGGC ATTCTCTGTG ATCCGACTAC TGGAAGAGCA CTTCAGTCAA
CTCATTGACT ATGACTTTAC GGCCCAAATG GAATCGGACC TCGATGAGAT CGCTGCTGGT
CAGGGAGACC GGGTCAATTG GCTTACGCAG TTCTATTTTG GGGGAGCCGG AGGCGACAAG
GCTGGCTTGA AGGAACTGGT GGAAGGGCTC GGGGACATTG ATGCCCGAGA GATCAACACC
GTGTCACTGG GTGAGGGCAT TGTTCTTCGG GTGGGGCGTT ATGGGCCGTA TATCGAGCAC
TTGACGGCAG ACACCGCGGA AGGTGAGAAC CCGCCGCGTG CGTCCGTCCC AGACGACATT
GCACCAGATG AACTGACACT TGACGTTGCT CGCGACTTGT TGGAAAACCA GAAAGACGGC
GACATTGAAC TTGGGTCAGA CCCAGTTAGT GGGCACATGA TTGTCGCGAA GTCTGGACGG
TTTGGCCCCT ACGTCACCGA GATCATCCCA GAACCGGAAC TCGATGAGTC GATGTCCGCT
GCGGCAAAGA AAAAAGCGAA GGCCGCGCTA CCCAAGCCGC GCACGGCATC ACTGTTCAAA
TCTCATTCGC TGACAACGAT CACACTGGAT GAGGCGCTCC AACTGTTGTC GTTGCCGCGT
GTGGTTGGTG TGGACCCGGA CACCGGAACA GAGATCACGG CGAACAATGG TCGCTACGGC
CCCTATCTCA AGAAGGGAAC AGACTCACGG ACGATCACGT CCGAGGAGCA ACTGCTCACG
ATCACGCTTG ATGAAGCACT AGAGATCTAC AAGCAACCCA AGCGAGGACG TGGGGCAACA
GCGTCCGCGC CGTTGCGCGA GTTGGGCGTG GACCCGACCA GTGAGAAGCC CATTGTCATT
AAAGATGGCC GGTTTGGTCC TTACGTCACC GACGGAAAAA CAAACCGTAC TCTGCCCAAA
GATGCCACCG TTGAGTCCGT GACCTTTGAG CAAGCCGTCG AACTTCTCGC GGAAAAGCGC
GCGAAAGCGC CAGTCAAGCG GGCGACCCGC ACGACCGCGA AGAAAAGCAC CGCGACCAAG
AAAACCACAA CAACTGCCGC AAAAAAGACG CCAGCCAAGA AAACGACAGC GACAAAGAAG
ACTCAATCCT GA
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| Protein sequence | MSQGRKLVIV ESPAKARTIS AYLGADFDVE ASVGHIRDLP QPSELPAEMK KSGYGKFAVD
VDNGFAPYYE VYPDKKKKVT ELRRLLKDAD ELYLATDEDR EGEAIAWHLL EALKPKVPVK
RMVFHEITRE AIQRALTTTR DLDERLVDAQ ETRRILDRLY GYEVSPVLWR KVRQGLSAGR
VQSVATRLVV ERERERMAFV PASYWDVTAQ FEATQGQDAG GTFQARLTHV DGTRVATGRD
FTDRGELKAR DVVHLTEDAA TTLAQSLTDA PATVASLDTK PYTRRPAAPF TTSTLQQEAS
RKLRMSSKTA MRVAQTLYEN GYITYMRTDS PALSAQAISA ARSQAADLYG TEFVPEKPRH
YASKSKGAQE AHEAIRPAGD TFRTPAQVAN VLSGDQFRLY ELIWKRTVAS QMADARGSTA
SVRIDVPGQV DGQTTTATFS ASGTVITFRG FLAAYEEGRD VDRYDDGSQS DGRLPHMVEG
DPLASRDVSA DGHTTTPPPR FTEASLVKAL EERGIGRPST YASTISTIQD RGYVNNRGQA
LVPSWLAFSV IRLLEEHFSQ LIDYDFTAQM ESDLDEIAAG QGDRVNWLTQ FYFGGAGGDK
AGLKELVEGL GDIDAREINT VSLGEGIVLR VGRYGPYIEH LTADTAEGEN PPRASVPDDI
APDELTLDVA RDLLENQKDG DIELGSDPVS GHMIVAKSGR FGPYVTEIIP EPELDESMSA
AAKKKAKAAL PKPRTASLFK SHSLTTITLD EALQLLSLPR VVGVDPDTGT EITANNGRYG
PYLKKGTDSR TITSEEQLLT ITLDEALEIY KQPKRGRGAT ASAPLRELGV DPTSEKPIVI
KDGRFGPYVT DGKTNRTLPK DATVESVTFE QAVELLAEKR AKAPVKRATR TTAKKSTATK
KTTTTAAKKT PAKKTTATKK TQS
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