Gene Jden_2125 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_2125 
Symbol 
ID8381283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp2323584 
End bp2324678 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content59% 
IMG OID645004877 
ProductArabinogalactan endo-1,4-beta-galactosidase 
Protein accessionYP_003162065 
Protein GI256833338 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3867] Arabinogalactan endo-1,4-beta-galactosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.825854 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGCAA CGACGCGAGC AGTCACCACC ACACGCCAAC CGCGACAACG CGCCACACTG 
GCAGTCATAC TCACAGTGCT CATTGCCCTG ACCTTCGCGG TCACCAGTCC ACACGCCACA
CCCCCAGCCC ACGCCGCCCC ACCATTCGCC AAAGGCGCTG ACATATCCTG GATCCCCGGG
ATGGAAGCCC AGGGACACAC CTGGAAAGAC AAGTGGGGAA CCACCCGCGA CGTCCTTGAC
ATTCTGCGCA CGGATTACGG AATCGAGTCC GCCCGCATCC GCGTGTGGGT CAACCCATCC
ACGGATTACG CAAACGGCTA CCTCAACACC GAACAAGCGG CGCGGCTCGC CCAACGAGCA
AAAAACAAAG GCATGCGCGT CATGCTCACC CTCCACTACT CCGACTCCTG GGCTGACCCC
GGCCAACAAA CCAAACCAGC GGCATGGGCC CGACTCACAG ATCAACAACT CATGGACACC
ATCTGGACCT ACACGCGGTC AGTGCTCACA ACAATGCGCA GCTACGGTGT CACACCTACG
TGGGTACAAA TCGGAAACGA AACAAACGAC GGCATGCTGT GGCCCAACGG CCGCGCATCC
GCATCCACCA CAGCGATGCG GAACTATGCC TACTTCGTCA CCACCGGTCA CAACGCCGTG
AAATCCATTG ACCCCTCGAT CACAACTATC GTGCACCTCG CCAACGGGGA CAACGCCTCC
CTCTACACCT GGAACATTGG TGGCATCATC GCCCACGGCG CCCAGTTCGA CGCGATCGGC
ATGTCGCTCT ACCCCACAGC GTCAACCTGG TCCGGTGCAG TCGACAGCGC AACAGCGAAC
ATGCGCAACC TGAAGTCACA GTACGGAAAA GATGTGATCG TGTCAGAAAT TGGCCTACCA
TACAACCAGC CTGCGGCCAC ACGAAGCTTC ATCACGAAGA TCATTCAATC CACAAGTAGC
GCGGGTGGAC TTGGGGTTTT CTATTGGGAA CCAGCGGCCA CGCCCGGTTA CAACGGCGGG
TACGACAAAG GCGCCTGGGG GACCAACGGT CGCCCCACAT CGGCTCTTGA AGGTTTTTGG
GCCACAGTGT CCTGA
 
Protein sequence
MHATTRAVTT TRQPRQRATL AVILTVLIAL TFAVTSPHAT PPAHAAPPFA KGADISWIPG 
MEAQGHTWKD KWGTTRDVLD ILRTDYGIES ARIRVWVNPS TDYANGYLNT EQAARLAQRA
KNKGMRVMLT LHYSDSWADP GQQTKPAAWA RLTDQQLMDT IWTYTRSVLT TMRSYGVTPT
WVQIGNETND GMLWPNGRAS ASTTAMRNYA YFVTTGHNAV KSIDPSITTI VHLANGDNAS
LYTWNIGGII AHGAQFDAIG MSLYPTASTW SGAVDSATAN MRNLKSQYGK DVIVSEIGLP
YNQPAATRSF ITKIIQSTSS AGGLGVFYWE PAATPGYNGG YDKGAWGTNG RPTSALEGFW
ATVS