| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1935 |
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| Symbol | |
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| ID | 8381098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 2120860 |
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| End bp | 2124510 |
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| Gene Length | 3651 bp |
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| Protein Length | 1216 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645004689 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003161880 |
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| Protein GI | 256833153 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.671489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTCT CGGGACTGCT CCCCAGCTTG CAAGCGGACA CCGACTTCAC CCACGCCGTG
GAACTCGCCC GCCACGGCGC ACCAGCAAAT ATCGTGGCAA GTATGGGGGT GCGCCCCGCC
CTACTCGCAG CGATGGTCAC GGCAACGCGC TCGCGGGACA ACGGGCCACA GCGTCGTGGA
CCAATTGTCG TGGTGACCGC GACAGGGCGT GAGGCTGATG AGTTGGCGCA GGCGCTTCGG
TGCTATGTGC CCACCGATGC GGTGGCCACG TTGCCAGCGT GGGAGACGTT GCCACACGAG
CGGCTTTCTC CTCGCTCAGA TACGGTGGCT CGCCGTCTTG CTGTGTTCCG CAGGCTCGCA
CACCCCAGCG CCGAGGGCGT GACAGGGGAC ATCGATGTGT TAACAGTGCC GGTGCGTGCA
CTGTTGCAAC CCGTAGTCCA GGGGCTCGGG GATTTGACCC CGGTTCGCCT TCAAGTGGGC
GACAGCGTTG ACCTGACTGA TGTGGCCCAC CAGCTTGCTG ACGCGGCTTA CGCTCGTGTG
GACATGGTGG AGCGCCGTGG GGAGTTCGCC GTCCGCGGGG GGATCCTTGA TGTGTTCCCT
CCTCACGAAG CTCACCCACT GCGCGTCGAT TTCTTTGGTG ACGAGGTCGA CGACATCACC
TATTTTGCGG TGGCAGACCA ACGATCTCTT GATCCTGCCC CCAACGGTGT GTGGGCACCA
CCGTGCCGTG AACTTCTGCT CACCGCGCAG ATTCGTCAGC GTGCCCACGA CCTTGTCCCC
CAACTTCCCG GGGCGGCAGA AATGTTGGAA AAGATGTCCC AGGGCATTGC CGTGGAAGGA
ATGGAGTCAC TGACTCCGGT CCTTGTGGAC ACCATGGTGC CGGTGTTAGA CATGCTTCCT
GATGATGTGA CCGTGGTGGT TCACGAACCG GAACGGGTGC GTCGTCGGGC CCACGATTTA
GTGGCAACAA CAGACGAGTT CCTTGCTGCA GCATGGACGG GTGCTGCCGC TGGTGGTTCG
ATTCCACTAG ATCTGTCACC CGCATCGTTC CTCACGTTGG AGGACGTTCG CGACCGCGCC
GCAGCGCGCG GTTTGACCTG GTGGAACATG GCGTCTTTCG GGTTAGGCGA CACTGCTAAC
AACGCAGGTT CCCCTGAGCC TGGCGGGCAG AACACTCTCG CAGGTGCCGG TGGCCTTGCG
GACTTTGATG ATGACGCATC GACCATTGTG CGGATCCCCA CCCGCGATGT TCATTCCTAC
CGTGGTGACT TCAGTAAAGC CCTTGACGAT GTGCGTGGCT TGCAGGTGGC TGGCTGGCGG
TTGGTGATGA CTTCAGAGGG GCATGGGCCA GCGCAACGCA TGGTGGAGCA ACTTGCCGGA
CTTGATGTGC CAGCGCGGTA CACCGAAACC CTCACGGAGG AACCAGAACC AGGGATTGTC
CATGTTGTTC CGGCAGCAGC AGGGCCTGGG TTTGTGGCCA CAGACCTCCA GCTTGCGGTG
TTCTCTGACC ATGACCTTGC TGGCCGGGCG GGCACCACAA CAAAAGACAT GCGGAAGATG
CCGTCACGGC GGCGAAACGT GGTGGATCCG CTCCAGCTCA AAGCGGGGGA TTTTGTTGTC
CATGAGCAGC ACGGTGTGGG CAAGTTCGTT GAACTTGTGC AACGCACCTT AGGGGCTCCT
GGAAACCAGG CTACCCGCGA ATACCTTGTC ATTGAGTATG CGGCATCGCG GCGCGGGCAA
CCCGGTGACC GGTTGTTTGT GCCAATGGAT CAACTGGACC AGGTGACCAA GTACACCGGT
GGTGAGCAAC CAAGCGTCAA CAAAATGGGT GGCGCTGACT GGCAAAAAAC TAAAGCGAAA
GCACGCAAAG CGATCAAGCA GATCGCTGGA GAATTGATCC GCCTGTACTC AGCGCGGATG
GCCACCCAAG GGTTTGCTTA TTCACCGGAC ACCCCTTGGC AGCGAGAGTT GGAAGACGCG
TTCGCCTATA TTGAAACCCC GGACCAACTC GCCACCATTG ACGAGGTCAA AGCTGACATG
GAAAAGATGA TCCCTATGGA CCGTCTGATC TGCGGTGATG TGGGTTATGG AAAAACGGAA
ATCGCGGTAC GTGCTGCGTT TAAGGCGGTG CAAGACGGTA AACAGGTGGC GATCCTCGTG
CCAACAACCC TGCTTGTTCA GCAGCACTAT GACACGTTCT CTGAACGGTA TGCAGGGTTC
CCTGTGACAG TGAAAGCGTT GTCGCGTTTC CAAAGTGACA AGGAATCACA AGAGGTCATC
TCAGGGATCT CAGAGGGCAC TGTCGATGTG GTGATCGGGA CCCACCGGCT GCTTTCAGGG
TCGATCCACT TCAAGGACCT TGGGCTTGTG GTCATTGACG AGGAACAACG TTTTGGGGTG
GAACACAAGG AAACGTTGAA GCAACTGCGC ACAAACGTGG ATGTGTTGGC TATGTCCGCG
ACCCCGATCC CGCGCACCTT GGAAATGGCG GTGACCGGGA TCCGGGAAAT GTCGACGTTG
GCCACACCAC CAGAGGAGCG CCACCCGGTC CTCACTTACG TGGGTGGTTA TGACGATAAG
CAAGTCATTG CTGCGGTGCG ACGCGAATTG TTGCGTGAAG GGCAAGTGTT TTACGTCCAC
AACAAAGTGG AAACCATCGA ATCAACGGCT GCTCGGATTA TGGATCTGGT GCCAGAAGCG
CGTGTTCGGG TGGCTCACGG ACGGATGAAT GAGCACGAGC TGGAACAAGT CATCCTTGAT
TTTTGGGAGA AACGGTTTGA TGTCCTCATC TCCACGACCA TCATTGAAAC CGGCCTGGAT
GTGTCGAATG CGAACACACT CATTGTTGAA CGCTCCGATG TGATGGGTCT GTCACAGCTG
CACCAGCTGC GAGGGCGGGT GGGGCGCGGG CGGGAACGTG CTTACGCATA CTTCTTCTTC
CCTCCAGAGA AACCTCTGAC AGAAACTGCT CACGAACGCC TCCAAACGAT CGCTGCGAAC
ACGGAGCTGG GTTCAGGCAT GCAGGTGGCC ATGAAGGACC TGGAAATTCG TGGGGCAGGT
AACCTCCTTG GCGGGGAACA ATCAGGTCAC ATTGCCGGGG TTGGGTTTGA CCTGTACATG
CGCATGGTGG GTGAAGCGGT TGCTGACTTC CGGGGGGAGA AACCAGAAGA AACCCCTGAG
GTGCAAATCG AACTTCCTAT CGATGCGCAC CTGCCCCACG ACTATGTGGG GCATGAACGG
TTGCGTCTTG AGGCGTACCG CAAGATCGCT GCGGCCACGA GTGCCCAACA GCTTGCCGAT
GTGCACGAGG AGTTGGTGGA CCGGTACGGG CAACCACCTG CGGAGGTGGC TAACCTCTTC
GCGGTGGCGA CGTTCCGCAA TGAGGTGCGT GACGTAGGGT TGCGTGATGT GACTGTGCAA
GGAAAGTTCG TCCGGTTTGC CCCGGTGGAG CTGCCAGAAT CAGCGACGTT GAAACTGAAA
CGGTTGTACC CGGGCTCGAT GATCAAACCG GTGGTGCGCA CGGTGCTGGT GCCATACCCC
ACCCAGGCGC GCATCGGTGG GCAGCCTTTG CGTGGTGAGG AACTCCTGGA CTGGGCGCGC
CGTTTTATCT CGACAATCAT TGCGCCGCCT GTGGTGTCGA AAGCAGACTG A
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| Protein sequence | MNLSGLLPSL QADTDFTHAV ELARHGAPAN IVASMGVRPA LLAAMVTATR SRDNGPQRRG
PIVVVTATGR EADELAQALR CYVPTDAVAT LPAWETLPHE RLSPRSDTVA RRLAVFRRLA
HPSAEGVTGD IDVLTVPVRA LLQPVVQGLG DLTPVRLQVG DSVDLTDVAH QLADAAYARV
DMVERRGEFA VRGGILDVFP PHEAHPLRVD FFGDEVDDIT YFAVADQRSL DPAPNGVWAP
PCRELLLTAQ IRQRAHDLVP QLPGAAEMLE KMSQGIAVEG MESLTPVLVD TMVPVLDMLP
DDVTVVVHEP ERVRRRAHDL VATTDEFLAA AWTGAAAGGS IPLDLSPASF LTLEDVRDRA
AARGLTWWNM ASFGLGDTAN NAGSPEPGGQ NTLAGAGGLA DFDDDASTIV RIPTRDVHSY
RGDFSKALDD VRGLQVAGWR LVMTSEGHGP AQRMVEQLAG LDVPARYTET LTEEPEPGIV
HVVPAAAGPG FVATDLQLAV FSDHDLAGRA GTTTKDMRKM PSRRRNVVDP LQLKAGDFVV
HEQHGVGKFV ELVQRTLGAP GNQATREYLV IEYAASRRGQ PGDRLFVPMD QLDQVTKYTG
GEQPSVNKMG GADWQKTKAK ARKAIKQIAG ELIRLYSARM ATQGFAYSPD TPWQRELEDA
FAYIETPDQL ATIDEVKADM EKMIPMDRLI CGDVGYGKTE IAVRAAFKAV QDGKQVAILV
PTTLLVQQHY DTFSERYAGF PVTVKALSRF QSDKESQEVI SGISEGTVDV VIGTHRLLSG
SIHFKDLGLV VIDEEQRFGV EHKETLKQLR TNVDVLAMSA TPIPRTLEMA VTGIREMSTL
ATPPEERHPV LTYVGGYDDK QVIAAVRREL LREGQVFYVH NKVETIESTA ARIMDLVPEA
RVRVAHGRMN EHELEQVILD FWEKRFDVLI STTIIETGLD VSNANTLIVE RSDVMGLSQL
HQLRGRVGRG RERAYAYFFF PPEKPLTETA HERLQTIAAN TELGSGMQVA MKDLEIRGAG
NLLGGEQSGH IAGVGFDLYM RMVGEAVADF RGEKPEETPE VQIELPIDAH LPHDYVGHER
LRLEAYRKIA AATSAQQLAD VHEELVDRYG QPPAEVANLF AVATFRNEVR DVGLRDVTVQ
GKFVRFAPVE LPESATLKLK RLYPGSMIKP VVRTVLVPYP TQARIGGQPL RGEELLDWAR
RFISTIIAPP VVSKAD
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