| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1927 |
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| Symbol | |
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| ID | 8381090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 2108585 |
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| End bp | 2111329 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645004681 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003161872 |
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| Protein GI | 256833145 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCATGC ATACCCCCAC CGAACGCACG CCACGTACCC GCCGGGTGTG GCGCATCGGC
TACCCAATGA TTGCAACGCT ATCAACCGCT TTCCTGCTCA TCGTGGCCGG GGCAGTGCCT
GCCTCGAGCG CCCCTCAACT CGACCTGCCC CGTGTGGCCT CAACGGACGT GGACACAGGA
CTTGTGCGCA GCGTTGACGG CGAACCGAGC GGCACACACG TCATTGCCAA CCTATTTCAA
TGGAACTGGA CGTCCGTAGC CCAGGAATGT ACAACCTCTA TCGGCCCAGC CGGGTACGAC
TACGTGCAAG TATCCCCACC CCAAGAGCAT GTCCTGGGCG ACGCCTGGTG GACCTCCTAC
CAGCCTGTGA GCTACCGCAT TGAGTCGAAA CTGGGAACCA GGGCAGAATT TGAGGCCATG
GTGGACACCT GCCGTGACGC AGGCGTCGGC ATCATTGCCG ATGCGGTGAT CAACCACATG
AGCGGCTCGC CTGAAGGAGA AGGCTGGGCG GGCACGCCAT ACTCCGAAGA GAACTACCCA
GGCCCGGAAG GGCAATACAC TCCGGCGAAC TTCAATGACT GTAAAACCGA CATTGCTGAC
TACAACAACC GCGAACAGGT ACAAAACTGC CGTCTCGTAG GTCTGCAAGA TCTCGCTACG
GGAACTGACT ATGTTCGTCA AGAAATCGCC GCGTACCTCG ATGACCTCGC TGACTTAGGG
GTGGCTGGCT ACCGTATTGA CGCTGCCAAA CACATGCCCG CAGCTGACCT CGAAGCGATC
AAGGCAGCAA CAACCACAGC AAAAAACCTC TACTGGGTGC ATGAAGTGAT TGGGTCTGGA
GGGGAACCGA TCCAACCCAG TGAATACTTA GGTTCTGGGG ATTCCCATGA GTTCAACTAT
GCACGCACGT TGCGCTCCCG CTTCGGTGGC GATATCGCCG ACCTGCAACT TCTCGGCACC
CACCTCACAC TCCTGCCCTC AGATGACGCC GGTGTTTTCG TGGACAATCA CGACACTGAG
CGCAACGGTG AAACTCTCAG CTACAAAGAT GGCGACCGCT ACGTGTTAGC CAACGTGTTC
ATGTTGTCTT ACCCCTATGG GCTGCCCACC GTGTACAGCG GATATGAGTT CTCTGAGCGT
GACGCCGGTG CGCCACAAGA CAGCACTGGA CTCATCGACG ATGTGACCTG TGCAGACGGC
GCGTGGACGT GTATGCACCG AAACCCTGTC ATCACATCAA TGGTGGGATT CGCCCACCAT
GTGGCTGGTG AACCTGTCAC CGACTGGGCA ACCGTCAGCG AGAACGTTAT TGGTTATGGG
CGCGATGACA AGGGATTTGT GGTCATCAAC AACTCAGCAG ATAGCGTGAC CCACACCTTC
ACCACATCCC TGCCTGCCGG GACGTATTGT GACGTGTTGG CTTCTGATTG CACGGAGCTG
ACTGTCGATG CGCAAGGAAC AGTCGACATC ACTGTCGCGC CGATGTCTGC AGTGGCGTTG
TCCACGGACA ATGCCAGCAA CTTGCAACCA CGAGACGTCG TTGTCCCTGA CACCGTCACG
GTGTACTACT CCACTGCTGC GGGGTGGGAC GACTATTACC TTCACTACGG AGTCGGGGAC
AGCTGGACTA CAGTTCCTGG CGAACAGATG CAACCAGCGT GTGACGGCTT TGTCGCCGCA
CAGATCACAA CGAACGGCAC CCCACCTGTG GTGACATTCA ACGACGGATC AGGAACGTGG
GACTCCAACA ACGGGGCAAA CTACACAGTG ACCCGTGAAC ACACACTCAT CCGCAACGGT
GTCACACACG AGATGGACCC CTGCTCCTTT GATCGAGCTG GGCAAACAAC GGTCTACTAT
GCCGTGAACC CGAACTGGGT TGAGCATCGG TTCCACTACA GTGTCGGACT CCGTGGCTGG
ACGCAAGTTC CCGGTGACCT CATGTACCCT GCCTGCGAAG GATGGGTGAA AAAGACCATC
GACACAGGGG GTGAGGACAT TGAAGGAGTG TTCAATTCCG AAGGGATGGA ATGGGACAAC
AACCAGGAAC AGAATTATCA TCTGTCCGGA CGTTACGTTC ACGTCAATGA GGGAACTGTG
ACTTCAGGGA ACCCGTGTGA CGGGCAAGAC GAACTGGACG AGCCGACGAC CCCGGAACCT
GAACCAGAGG AACCGGCGAA CCCTGACTAC ACAACGACCC GCGTCTACTA CCGTTCTGCT
GATCAGTGGG CAACCACGTA CATCCACTTT GGTGTGGCTG GTGGAGCATG GACTGAGGTG
CCGGGTATTG AAATGGCCCA GGTGTGTGAC GGTTGGCTGC GCCATGACAT TGATTCAGAA
GGACGTCGAG TCCAGGTGGC ATTCAATGAT GGAGGCGAGA ACTGGGACTC CAACAACGGT
GCGAACTACC AGGTCACTAG TGAATCAGTC ACTATTGAGG ACGGTGTTCT TGCTGAGGGG
GATCCCTGCC CAACAGTCAC CGAGCCGGAC ACCGATAATC CAGACAACGC AGATGACACA
GACTCAGGGC AGGGCAGTGG GGATAACCCG GGAACTGACA GTGGTGTTGA GGGCGATGAT
CTGCAAGCTG GCGCTGGCGC TGGCAGCGGC GGTGCCGGGG ACGAACTGGC TGACACGGGA
GCCGACCTCA TGGCGGTCCT GGCGTTGTCT GCCCTCTCGA TCCTTCTTGC AGGCATGGGC
TTCATGGTAC GCAAGGGTCG TCTGGGGCGA CAAAGCATTC GCTGA
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| Protein sequence | MRMHTPTERT PRTRRVWRIG YPMIATLSTA FLLIVAGAVP ASSAPQLDLP RVASTDVDTG
LVRSVDGEPS GTHVIANLFQ WNWTSVAQEC TTSIGPAGYD YVQVSPPQEH VLGDAWWTSY
QPVSYRIESK LGTRAEFEAM VDTCRDAGVG IIADAVINHM SGSPEGEGWA GTPYSEENYP
GPEGQYTPAN FNDCKTDIAD YNNREQVQNC RLVGLQDLAT GTDYVRQEIA AYLDDLADLG
VAGYRIDAAK HMPAADLEAI KAATTTAKNL YWVHEVIGSG GEPIQPSEYL GSGDSHEFNY
ARTLRSRFGG DIADLQLLGT HLTLLPSDDA GVFVDNHDTE RNGETLSYKD GDRYVLANVF
MLSYPYGLPT VYSGYEFSER DAGAPQDSTG LIDDVTCADG AWTCMHRNPV ITSMVGFAHH
VAGEPVTDWA TVSENVIGYG RDDKGFVVIN NSADSVTHTF TTSLPAGTYC DVLASDCTEL
TVDAQGTVDI TVAPMSAVAL STDNASNLQP RDVVVPDTVT VYYSTAAGWD DYYLHYGVGD
SWTTVPGEQM QPACDGFVAA QITTNGTPPV VTFNDGSGTW DSNNGANYTV TREHTLIRNG
VTHEMDPCSF DRAGQTTVYY AVNPNWVEHR FHYSVGLRGW TQVPGDLMYP ACEGWVKKTI
DTGGEDIEGV FNSEGMEWDN NQEQNYHLSG RYVHVNEGTV TSGNPCDGQD ELDEPTTPEP
EPEEPANPDY TTTRVYYRSA DQWATTYIHF GVAGGAWTEV PGIEMAQVCD GWLRHDIDSE
GRRVQVAFND GGENWDSNNG ANYQVTSESV TIEDGVLAEG DPCPTVTEPD TDNPDNADDT
DSGQGSGDNP GTDSGVEGDD LQAGAGAGSG GAGDELADTG ADLMAVLALS ALSILLAGMG
FMVRKGRLGR QSIR
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