| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1926 |
|---|
| Symbol | |
|---|
| ID | 8381089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2106179 |
|---|
| End bp | 2108245 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645004680 |
|---|
| Product | Alpha-amylase |
|---|
| Protein accession | YP_003161871 |
|---|
| Protein GI | 256833144 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGTG GTCATCGCAT GAAAAAAGGA GCAAGCGCAA TTATTGGTTT GTGTGCCAGT
GCGCTCATGG CGCTCACTGT GGCACTTGTG CCGACAACAG CAGCACAAGC AGGCCCACCG
CAACGCAACA ATTCCGATGT CATTTCCAAC ATGTTCCAAT GGACGTGGAA CTCTGTTGCC
AGAGAATGCA CCCAAGTTCT TGGCCCTCAA GGCTACGGAT ATGTACAAGT GTCGCCACCC
CAAGAGCACA TCCAAGGAAG CCAATGGTGG ACTTCCTACC AGCCCGTAAG CTACCGCATC
GAATCGAAAC TCGGAACTCG GGCAGAATTC AAAGCTATGA TCACAGCCTG CAATAACGCA
GGTGTCGGAG TCATAGCAGA CGCTGTCATC AACCACATGA CCGGGCAAAC TGGTGGAACC
GGGTGGGCTG GCACTACCTT CTCCCTCGAG AACTACCCTG GCCCTGACGG TGGATACAGC
CCTCAAGACT TCAACTCGTG CAAGCGCAAC ATCGCAAACT ACGGCGACCG GTACGAGGTG
CAAAACTGCC GCCTTGTTGC ATTGCAAGAT TTAGCCACTG GAAACACCTA CGTGCGTCAA
GAAATTGCAC GATACCTTGA CGACCTCGCA TCCTTGGGAG TCGCAGGATT CCGTATTGAC
GCGGCCAAAC ACATTCCAGC AACAGACTTG GAAGCAATCA AAGCAGCAAC CACCCAAGCC
AAAAACCTCT ATTGGATTCA TGAGGTGATC GGTGCCCCCG GTGAACCTGT CCAACCGAGT
GAATACCTCG GCTCAGGAGA TTCTCACGAA TTTGGATATG GGCGAGCCCT CAAAGATGCA
TTTGATGGTG ACATTGCTTC CTTGCAGAAC ATCAACAACC GTGGTTTCCT CCCATCGAAT
CGCGCAGGTG TTTTTGTTGA TAACCATGAC ACTGAACGCA ACAACGAAAC AATGACTTAT
CAATGGGGTG CAAAATACAA ACTGGGCAAT ATTTTTATGT TGTCTTACCC CTATGGGAGC
CCCTCCACTT ACAGCGGGTA CACGTTCAGT AATAAGGACG CAGGCGCTCC CCAGAACGGT
CAGGGAAAGG TCAACGACGC TGAATGCACC TCCGGTGCGT GGACCTGTGC ACACCGGTGG
CCCGAAATTG CCAACATGGT GGGCTTCCAC AACACAGTCA ACGGCACAAA CCTCAGTAAC
TGGCAGTCCC CAACACGGAA CGTGATCGCC TACAACCGAG GCAACAAAGG GTTTGTAGCG
TTGAACAACA CCAATTCGGC GACAACCCGT GAGTTCATAA CGACCTTGCC CAACGGGCGC
TACTGCAACG TTGTCGCGTC CAATACCTGC ACCCAAACGT TCACTGTCTC TGGAGGGAAA
GTGTCGGTGA CGCTGCCAGC ATATGGGGCA GTGGCACTCC ACACTGGAGC GCTGGACGGT
GTGACACCCG ACCCAGACCC CGACCCCACG CCGGACCCCA CCCCAGGTGA GGCCCTTACC
GTGTACTACT CCACGGACAA GAACTGGAGC AACTACCGGA TTCACTACCG TGTCGGCACA
GATTCGTGGA CTACTGCGCC GGGTGCTGCC ATGGCTCCAG CATGCACGGG CTGGGTCAGT
GCAACAGTTC CCAGTAACGG AAGCGCGGTC ACCGCCGCGT TCAATAACGG GTCAGGAACC
TGGGACAACA ACTCCGGGAA GGACTACACC TTGACCGGCT CCGTTGCTGC AGTGAAAGGT
GGGGCTGTCA CAACGCACAA CCCATGCTCT GGTGGCGGCG GCTCAGCAAC ACAAGTGTTC
TACTCAACCA CAGCGAACTG GAGCACCTAC AACATCCACT ACAAGGTCGA CGGCGGTTCG
TGGACCTCAG TGCCTGGGGA CAGCATGACC GCAGCATGCA ACGGGTGGGT GACCCGCACA
ATCGCAAGCG CGGGGAAAAA CGTCACTGCC GCGTTCAATA ACGGCTCAGG CACCTGGGAT
AACAACTCGG GCAAAGACTA CACATTCAGC GGTGATGTGA TCCAAATCGC GAATGGCGCA
GTCACTGCAG GTAATCCCTG CGTGTAA
|
|---|
| Protein sequence | MIRGHRMKKG ASAIIGLCAS ALMALTVALV PTTAAQAGPP QRNNSDVISN MFQWTWNSVA
RECTQVLGPQ GYGYVQVSPP QEHIQGSQWW TSYQPVSYRI ESKLGTRAEF KAMITACNNA
GVGVIADAVI NHMTGQTGGT GWAGTTFSLE NYPGPDGGYS PQDFNSCKRN IANYGDRYEV
QNCRLVALQD LATGNTYVRQ EIARYLDDLA SLGVAGFRID AAKHIPATDL EAIKAATTQA
KNLYWIHEVI GAPGEPVQPS EYLGSGDSHE FGYGRALKDA FDGDIASLQN INNRGFLPSN
RAGVFVDNHD TERNNETMTY QWGAKYKLGN IFMLSYPYGS PSTYSGYTFS NKDAGAPQNG
QGKVNDAECT SGAWTCAHRW PEIANMVGFH NTVNGTNLSN WQSPTRNVIA YNRGNKGFVA
LNNTNSATTR EFITTLPNGR YCNVVASNTC TQTFTVSGGK VSVTLPAYGA VALHTGALDG
VTPDPDPDPT PDPTPGEALT VYYSTDKNWS NYRIHYRVGT DSWTTAPGAA MAPACTGWVS
ATVPSNGSAV TAAFNNGSGT WDNNSGKDYT LTGSVAAVKG GAVTTHNPCS GGGGSATQVF
YSTTANWSTY NIHYKVDGGS WTSVPGDSMT AACNGWVTRT IASAGKNVTA AFNNGSGTWD
NNSGKDYTFS GDVIQIANGA VTAGNPCV
|
|---|
| |