| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1894 |
|---|
| Symbol | |
|---|
| ID | 8381058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2072493 |
|---|
| End bp | 2073719 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645004648 |
|---|
| Product | threonine dehydratase |
|---|
| Protein accession | YP_003161840 |
|---|
| Protein GI | 256833113 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01127] threonine dehydratase, medium form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.878805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTC CACCCAAACC GTGGCCAGTC ACAGCCCGTG CCATTGACGA GGCCGCATCC
CTTCTTGAAT CAGTCGCCAG AGTGACTCCC GTTGAGTCCT CGCGTGCTTT ATCCACCTAC
AGTGGGCAAC CCACCTGGCT AAAGTGTGAG AATCTCCAAC GGTCAGGGTC GTTTAAAGTT
CGTGGCGCCT ACGTGCGCAT GTCTCGCCTG AGCGCAGAAG AAAAGGCCGC GGGTGTGGTG
GCTGCTTCCG CCGGGAACCA CGCACAGGGG GTGGCAGTTG CCGCCGCATC GCTAGGAATT
AACGCAGTGG TGTATATGCC ATCGGATGCG GCGCTACCCA AAGTCGCCGC GACCCGTGAA
TACGGTGCTG AGGTGAGGCT GGTGGGGACA AGCGTTGACG ATGCGCTCAC GGCAGCGAAG
CAGGAAGCAC AGGCCACTGG TGCGACTTTC ATCCACCCCT TTGACCACAA CGATATTATT
GCTGGTCAAG GGACGGTGGC GCGAGAGATC CTTGACCAGG TCCCCGATGT TGCCACGATC
CTTGTCCCCG TGGGGGGTGG CGGGCTTCTT GCCGGAGTCG CCGCTTACTG TGCTCAACGC
GCGCCCCATG TCACTGTCGT TGGGGTCCAA GCGGCACGCG CATCGGCGTG GACCCATTCG
CTGGTGCACG GGGAACCCAC GACAACCGAT GTCGCCTCCA CCATGGCAGA CGGAATTGCG
GTGTCCACGC CAGGGGTGCA CCCGTTCGAG ATCGCGCAAC GGGCGAAAAC CCGGGTCGTC
ACAGTATCTG AGGAGGACAT TTCGCGGGCG CTGCTGTACA CCACGGAACG CGCGAAACTT
GTTGTTGAAC CAGCTGGGGT TGCCGGTGTC GCTGCGCTGA TGGCTTACCC TGGACAGTTT
GAGGGACCTG TTGTGGCAGT TCTGTCGGGT GGCAACATCG ACCCCAATGT GATGCTTCGA
GTGGTGCGCC ATGGTCTTGT TGCTGCAGGG AGGTTCCTGG TCATGAAAGT GAACCTCATT
GATCGTCCAG GGGCACTGGC CACCATGCTG TTTGACTTGG CGTCACAAAA AGCGAACATC
ATGCACGTCG ACCACGTTCG AACAGGAGTG GACCTTGCCA TCGATGAGGT GGAGGTGACG
ATGCAAGTGG AAACCAAAGG GCCGGAACAC TGCGCGGAGC TCTTGGAGTT CATGCGCTCA
CGTGGGTACC GCTTGTCCTC AACCTGA
|
|---|
| Protein sequence | MSFPPKPWPV TARAIDEAAS LLESVARVTP VESSRALSTY SGQPTWLKCE NLQRSGSFKV
RGAYVRMSRL SAEEKAAGVV AASAGNHAQG VAVAAASLGI NAVVYMPSDA ALPKVAATRE
YGAEVRLVGT SVDDALTAAK QEAQATGATF IHPFDHNDII AGQGTVAREI LDQVPDVATI
LVPVGGGGLL AGVAAYCAQR APHVTVVGVQ AARASAWTHS LVHGEPTTTD VASTMADGIA
VSTPGVHPFE IAQRAKTRVV TVSEEDISRA LLYTTERAKL VVEPAGVAGV AALMAYPGQF
EGPVVAVLSG GNIDPNVMLR VVRHGLVAAG RFLVMKVNLI DRPGALATML FDLASQKANI
MHVDHVRTGV DLAIDEVEVT MQVETKGPEH CAELLEFMRS RGYRLSST
|
|---|
| |