Gene Jden_1888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_1888 
Symbol 
ID8381052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp2068195 
End bp2069019 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content61% 
IMG OID645004642 
ProductHly-III family protein 
Protein accessionYP_003161834 
Protein GI256833107 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACA CCAACATGAC GAATAACAAC ACCAACCACG ACGACCCGCC CCACGGAGAC 
CCCATGGCTG ACACCCCACC TCCCGCCCGG CGGCAACCCT TTGACGCCAG CCACCACGCA
CAAGAAGCAG CCCGCCAAGC GAGTCTCGCC GCCGAAAAAG CCGCCGACCA GGTCAGTCAC
GCACTCAACG CCATGAAGCC CAAGCTTCGT GGCTGGATCC ACGCAGGAAC TTTTCCCCTC
GCACTTGCTG CAGGGATCCT CCTCATCGTC TTGGCCCCCG CTACTGCCCC CAAAGTTGCC
GCAACAGTCT TCGCAGTCTC ATCCTGGCTC CTGTTTGGCA CATCAGCCGT CTACCACCGC
GGTAACTGGA GCCCAGCTGT CCTTGCTGCA CTAAGGCGGT GGGACCACTC CAACATCTTC
CTCATCATCG CGGGAACCTA CACCCCACTA GCAGTCATCC TCCTCCCCCA AAGCACCGCC
ACAATCCTCC TCATTGTCGT CTGGAGTGGG GCACTGCTTG GACTGGCTGC ACGGATCATC
TGGTTAGGCG CGCCCCGTTG GGTGTACGTT CCCATCTACA TTGCCCTGGG GTGGGTCGCC
CTGTGGTTCC TCCCCAACTT CTGGACCAGT GGTGGCCCCG CTGTTGTCTG GCTCGTCGCA
GGCGGCGGAC TCGCCTACAC CCTCGGGGCC TTGGTTTACG GCCTCAAACG CCCCAACCCC
AGCCCACTCT GGTTTGGGTT CCACGAAATA TTCCACGTCT TCACCGTGAT CGGGTTCTTC
TGCCACTACG TGGCTGTCCT CATCGCAGTC CTCGCGCTGC GCTAA
 
Protein sequence
MSDTNMTNNN TNHDDPPHGD PMADTPPPAR RQPFDASHHA QEAARQASLA AEKAADQVSH 
ALNAMKPKLR GWIHAGTFPL ALAAGILLIV LAPATAPKVA ATVFAVSSWL LFGTSAVYHR
GNWSPAVLAA LRRWDHSNIF LIIAGTYTPL AVILLPQSTA TILLIVVWSG ALLGLAARII
WLGAPRWVYV PIYIALGWVA LWFLPNFWTS GGPAVVWLVA GGGLAYTLGA LVYGLKRPNP
SPLWFGFHEI FHVFTVIGFF CHYVAVLIAV LALR