Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1888 |
Symbol | |
ID | 8381052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 2068195 |
End bp | 2069019 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 645004642 |
Product | Hly-III family protein |
Protein accession | YP_003161834 |
Protein GI | 256833107 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGACA CCAACATGAC GAATAACAAC ACCAACCACG ACGACCCGCC CCACGGAGAC CCCATGGCTG ACACCCCACC TCCCGCCCGG CGGCAACCCT TTGACGCCAG CCACCACGCA CAAGAAGCAG CCCGCCAAGC GAGTCTCGCC GCCGAAAAAG CCGCCGACCA GGTCAGTCAC GCACTCAACG CCATGAAGCC CAAGCTTCGT GGCTGGATCC ACGCAGGAAC TTTTCCCCTC GCACTTGCTG CAGGGATCCT CCTCATCGTC TTGGCCCCCG CTACTGCCCC CAAAGTTGCC GCAACAGTCT TCGCAGTCTC ATCCTGGCTC CTGTTTGGCA CATCAGCCGT CTACCACCGC GGTAACTGGA GCCCAGCTGT CCTTGCTGCA CTAAGGCGGT GGGACCACTC CAACATCTTC CTCATCATCG CGGGAACCTA CACCCCACTA GCAGTCATCC TCCTCCCCCA AAGCACCGCC ACAATCCTCC TCATTGTCGT CTGGAGTGGG GCACTGCTTG GACTGGCTGC ACGGATCATC TGGTTAGGCG CGCCCCGTTG GGTGTACGTT CCCATCTACA TTGCCCTGGG GTGGGTCGCC CTGTGGTTCC TCCCCAACTT CTGGACCAGT GGTGGCCCCG CTGTTGTCTG GCTCGTCGCA GGCGGCGGAC TCGCCTACAC CCTCGGGGCC TTGGTTTACG GCCTCAAACG CCCCAACCCC AGCCCACTCT GGTTTGGGTT CCACGAAATA TTCCACGTCT TCACCGTGAT CGGGTTCTTC TGCCACTACG TGGCTGTCCT CATCGCAGTC CTCGCGCTGC GCTAA
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Protein sequence | MSDTNMTNNN TNHDDPPHGD PMADTPPPAR RQPFDASHHA QEAARQASLA AEKAADQVSH ALNAMKPKLR GWIHAGTFPL ALAAGILLIV LAPATAPKVA ATVFAVSSWL LFGTSAVYHR GNWSPAVLAA LRRWDHSNIF LIIAGTYTPL AVILLPQSTA TILLIVVWSG ALLGLAARII WLGAPRWVYV PIYIALGWVA LWFLPNFWTS GGPAVVWLVA GGGLAYTLGA LVYGLKRPNP SPLWFGFHEI FHVFTVIGFF CHYVAVLIAV LALR
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