| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1882 |
|---|
| Symbol | |
|---|
| ID | 8381046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2061346 |
|---|
| End bp | 2062686 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645004636 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003161828 |
|---|
| Protein GI | 256833101 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.822809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA CTACCCGCAC GCGCCGGTTC ACGGCAGCTG TCGCAGGTGT CTCCGTCCTC
GCACTCGGCC TCGCTGCGTG CTCTGGAGAC ACCGAACCAA ACGACAACGA AACAACAGGG
GGCGGCGACG CATCGGGTGA GCAAATCACA CTGACCATCG CTACCTTCAA CAACTTCGGC
TACACCGACG AACTCCTCCA GGAGTACACA GACCTCAACC CCAACGTGAA GGTTGAGCAA
AACGTTGCAG CCAAGTCAGA CGACGCCCGC CTCAACCTGA CCACAAAAAT GGCAGCAGGC
GGCACCGGTC TTGCTGACAT TGAAGCAATC GAGATCGACT GGATGCCAGA ACTCGAGATC
GTCAAGGACA GCTTCGCTGA CCTCGAAGGA GTCGAAGGCA TTGACGGTCG TTGGCTCGAC
TGGAAAGAAG CACAAGGGCG CACCACCGAC GGCAAGCTCA TTGGTTACGG TACTGACATT
GGCCCACAGG CTATCTGCTA CCGCTCCGAC CTCTTCGAAG AAGCTGGCTT CGACGGATCC
CGTGAAGCTG TCGCCGACAT GATCGGTGGA GATGGCGCAA CCTGGGACTC CTACTTCAAA
GCCGGTGAAG AATTTGCCGC GAAGTCAGAC GTCCCATGGT TTGACTCCGC AGGCGCGATC
TGGCAAGGCA TTGTCGCACA GATTCCAGAA CCTTACGAAA ACAAGGCAGA CGGAACTGCC
AAAGATCTCG CACAAAACAC CGAGATCAAG GCGGCCTACG ACCAGGTCAC TGCTGCATCA
GAGAAGCTTT CAGCAGGCTA CGAGCAGTGG AGCGAAGACT GGAATGCTGC ATTCCAAAAC
AACGGTTTTG CTACCATGCT GTGCCCAGCT TGGATGACCG GCCCCATCGA ATCGAACTCC
GGTGGTGTTG AAGGATGGGA CGTTGCTGAC GTCTTCCCTG GTGGCGGTGC GAACTGGGGT
GGCTCGTTCC TCACCGTTCC TGCAGCTGGT GAACACGTCG AAGAAGCAAA GAAACTGGCT
GCATGGTTGA CGGCACCAGA ACAGCAAATC AAAGCCTTCA ACAACGCAGG AACCTTCCCA
AGCCAGGGCG AAGCACTGTC GGCCCCTGAC CTTCTGGAAG CCACAAACGA CTTTATGAGT
GGCGCCCCTG TCGGTCAGAT CTTCTCCAAC CGTGCTCAGA ACATTGACGC ATCGACCCTG
CCATACAAAG GCCCCAACTA CTTCAAGATC AACTCGACAA TCTCAGACGC TCTCAAGCGT
GTTGATGTTG AGCAGTCAGA CGATGCAGCA GCGTCATGGG ACAAGGCAGT CTCAGCGTTC
AACGAACTCG GGGTGATGTG A
|
|---|
| Protein sequence | MIRTTRTRRF TAAVAGVSVL ALGLAACSGD TEPNDNETTG GGDASGEQIT LTIATFNNFG
YTDELLQEYT DLNPNVKVEQ NVAAKSDDAR LNLTTKMAAG GTGLADIEAI EIDWMPELEI
VKDSFADLEG VEGIDGRWLD WKEAQGRTTD GKLIGYGTDI GPQAICYRSD LFEEAGFDGS
REAVADMIGG DGATWDSYFK AGEEFAAKSD VPWFDSAGAI WQGIVAQIPE PYENKADGTA
KDLAQNTEIK AAYDQVTAAS EKLSAGYEQW SEDWNAAFQN NGFATMLCPA WMTGPIESNS
GGVEGWDVAD VFPGGGANWG GSFLTVPAAG EHVEEAKKLA AWLTAPEQQI KAFNNAGTFP
SQGEALSAPD LLEATNDFMS GAPVGQIFSN RAQNIDASTL PYKGPNYFKI NSTISDALKR
VDVEQSDDAA ASWDKAVSAF NELGVM
|
|---|
| |