| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1880 |
|---|
| Symbol | |
|---|
| ID | 8381044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 2059257 |
|---|
| End bp | 2060177 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 645004634 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003161826 |
|---|
| Protein GI | 256833099 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.228112 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCTC CGACATCACT TCCTGTTATT GCTCAAACGT CAGGGAAGGC AGCTGCTGAG
TGGCAACGCA AACGTCGGCG TGTCTCCGTG GGCGGTACCC AGCGCCGACC TGGATGGGTG
ACTTACCTCC TGTTGAGCCT GGTGATCCTC ATCTCGATTT TCCCGCTGTA CTACGTGGTG
CTGTTGGCTT CCTCGGACCA GGTCACGATT TCTCGATCAA TCATCCCGTC ATGGATTCCG
CAAGGAAACT TCTTTGAGAA CATCGACAAA GTCTTTAATG GCGCGATCCC TGTTCTTAAA
GGTTTCACGA ACTCGCTGAT CATCGCGGTG ATTCAGTCTG TTTCTGTGGT GATTTTTTCC
ACTCTTGCTG GGTACTCCTT TGCGAAGCTC AGCTTCCGTG GTCGTGGGCC ACTGCTCGTC
TTTGTGATCG CAACAATGGC CGTCCCTGTG CAGTTGGGTG TGGTTCCGCT CTTCATCGTG
ATGTCCCAAC TTGGCTGGTC AGGAAAGATC ATTGCGGTGA TTGTGCCGGG TCTTGTCACT
GCCTTTGGTG TGTTCTGGAT GACGCAATAC CTCGAGAATG CGTTGCCCTA TGAGTTGGTG
GAAGCCGCCC GCGTGGATGG TGCTTCCATG ATCCGCACAT TCTGGCATGT CGCGGTACCG
GCAGCCCGCC CAGCAGCGGC CATGCTTGCG TTGTTCACAT TTATTGGGTC GTGGGTCAAC
TATTTCTGGC CGTTCATTAT TTTGAACCAG CAGAACCCCA CATTGCCTAT GGTGACGAAG
CTGTTGCAGT CTGGGTACCA CACTGATTAC TCGCTCATTA TGGCTGGTGT GGCAATTTCG
ACTGCACCAC TACTCGTTTT GTTCTTCCTC GCCGGACGTC AACTCGTTGC CGGTATTATG
CAAGGAGCTG TGAAGGGATG A
|
|---|
| Protein sequence | MTSPTSLPVI AQTSGKAAAE WQRKRRRVSV GGTQRRPGWV TYLLLSLVIL ISIFPLYYVV
LLASSDQVTI SRSIIPSWIP QGNFFENIDK VFNGAIPVLK GFTNSLIIAV IQSVSVVIFS
TLAGYSFAKL SFRGRGPLLV FVIATMAVPV QLGVVPLFIV MSQLGWSGKI IAVIVPGLVT
AFGVFWMTQY LENALPYELV EAARVDGASM IRTFWHVAVP AARPAAAMLA LFTFIGSWVN
YFWPFIILNQ QNPTLPMVTK LLQSGYHTDY SLIMAGVAIS TAPLLVLFFL AGRQLVAGIM
QGAVKG
|
|---|
| |