| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1787 |
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| Symbol | |
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| ID | 8380951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1948652 |
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| End bp | 1950694 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645004540 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_003161733 |
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| Protein GI | 256833006 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.810933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATCC GCCCACGACT CGCAACGAGT CATAACGAGG GGGAAGGGTC CTTCGTGTCA
CAAACCACCC CACAGCAGAA CAGCGCCCAA GGCGCGCTCT CCAGTCTGCG CCTCCCAGAA
CTCCAGTCCA TTGCGTCACA ACTGGGAGTG CGGGGCATCT CTAAGATGCG CAAATCTGAC
CTGATCGGTG CCATCGAGCA AGCGCAAGGG AGCGCAGGCC GCACAGCCGC ATCGTCCACA
CCACGCTCGC GTAGCGCAGC AGAAACCACT ACCGCACAGT CACCTAGCGC ATCTGCTCCA
GCTGACAAGC CAACCAAGAC GGACAGCGAC AAACCAGCCC GAGCCTCCCG AACGCGCGCC
CCTCGCAACC AGCAAGACCA CCGCGATACC GCGCAGGCAC CCACCGAAGC ACATGGCGAA
CAACAGGCCA CCACAAAAAA CGCCACACCA GAAAGCGGGC AATCCCAGTC CGCTGTTATT
GGAGACTTCG AAATCAAACT TCCAGAGCCA GGGGACTCAG ACCGTCGACG CGACCGCAAT
CAAGGGCGTG ACCAGCGTTC AGACAACCAA GACAACGAGT CGCGCGGACG AAACCGTCAA
CGACAGCGCG ACAACAGCGA CGACCGCCAA GAACGGAAAA ACTCGCAACA AGGCTCGTCG
AACAACCAGT CAAACAACCA GTCGAACAAC GCTCAAAACA ACCAAAAAAA CTCCAACGAG
CAGAACTTCC ACGGTGACGA TGACCGATCC AACCGCCGCC GCCGTGGCCG CGACCGTCAC
CGTGATCGTG ACCGCAACAA CGATCGTAAG CGCGGGCGTC GCAACAATGA GCTGGCCTAC
GATGATTCAG AGGTCGCAAC CGACGAACCG CTGATTCCAG TTGCTGGGAT CCTCGACATT
CTTGATAACT ACGCGTTCGT GCGCACCACT GGGTACCTTC CTGGAACCAA CGACGTTTAC
GTGTCACTAG GTCAGGTCAA AAAGGCGGGA CTGCGCCGCG GCGATGCCAT CACTGGCGCC
ATCCGCCAAC CCCGTGACCA GGACCAACAC GGTGGCAATA ACCGCCAAAA GTTCAACGCA
CTCGTGCGCC TGGACACCGT TAACGGTCTT CCCCCAGAAG AAGCCCGTCA ACGCCCAGAC
TTCAACAAAC TGACGCCGCT TTACCCAAGC GAACGCCTCC AGTTGGAAAA TGCCGACTCT
AACCGCTTAG CGCCACGCAT CATTGACATC CTTGCCCCCA TTGGTAAGGG GCAACGCGGT
CTCATTGTTG CGCCACCGAA AGCCGGCAAA ACGATCATCA TGCAGCAGAT CGCCAACGCG
ATCTCGATCA ACAACCCTGA AGTCCACCTC ATGGTTGTTC TTGTTGATGA GCGTCCTGAA
GAAGTGACCG ACATGGAACG CACCGTCAAC GGCGAAGTGA TTGCGTCAAC GTTTGACCGC
CCAGCATCCG ATCACACGAT CGTTGCGGAA CTTGCGATCG AACGCGCCAA GCGCCTCGTG
GAGCTCGGCC AGGACGTCGT TGTGCTCCTG GATTCCATCA CCCGGTTGGG CCGTGCCTAT
AACCTTGCGG CTCCCGCCTC AGGCCGAATC TTGTCCGGGG GTGTTGATGC TGCGGCACTG
TACCCGCCAA AGAAATTCTT CGGGGCCGCC CGGAACATCG AAGATGGTGG CTCGTTGACG
ATTCTTGCGT CAGCTCTGGT CGAAACCGGC TCCAAAATGG ACGAGGTTAT CTTCGAAGAG
TTCAAGGGAA CAGGAAACAT GGAGTTGCGT TTGTCCCGGT CGCTGGCCGA CAAGCGGATC
TTCCCAGCGA TCGATATTTC CGGGTCCGGA ACACGCCGCG AAGAACTTCT CGTGCGCGGC
GACGAACTGA AAATCATGTA CAAGCTTCGC CGGGTTCTGC ACGCGTTGGA TCAAACCCAA
GCGGTGGAAC TGCTCATCAA GAAACTCAAA GAGCACCCGC GCAATGTGGA GTTTTTGTTG
TCCGTGCAAA AGACAACACC AGATTCGCTT GCCGACCTCC GCGGAAACGA CCACGAAGTC
TGA
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| Protein sequence | MDIRPRLATS HNEGEGSFVS QTTPQQNSAQ GALSSLRLPE LQSIASQLGV RGISKMRKSD
LIGAIEQAQG SAGRTAASST PRSRSAAETT TAQSPSASAP ADKPTKTDSD KPARASRTRA
PRNQQDHRDT AQAPTEAHGE QQATTKNATP ESGQSQSAVI GDFEIKLPEP GDSDRRRDRN
QGRDQRSDNQ DNESRGRNRQ RQRDNSDDRQ ERKNSQQGSS NNQSNNQSNN AQNNQKNSNE
QNFHGDDDRS NRRRRGRDRH RDRDRNNDRK RGRRNNELAY DDSEVATDEP LIPVAGILDI
LDNYAFVRTT GYLPGTNDVY VSLGQVKKAG LRRGDAITGA IRQPRDQDQH GGNNRQKFNA
LVRLDTVNGL PPEEARQRPD FNKLTPLYPS ERLQLENADS NRLAPRIIDI LAPIGKGQRG
LIVAPPKAGK TIIMQQIANA ISINNPEVHL MVVLVDERPE EVTDMERTVN GEVIASTFDR
PASDHTIVAE LAIERAKRLV ELGQDVVVLL DSITRLGRAY NLAAPASGRI LSGGVDAAAL
YPPKKFFGAA RNIEDGGSLT ILASALVETG SKMDEVIFEE FKGTGNMELR LSRSLADKRI
FPAIDISGSG TRREELLVRG DELKIMYKLR RVLHALDQTQ AVELLIKKLK EHPRNVEFLL
SVQKTTPDSL ADLRGNDHEV
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