| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1680 |
|---|
| Symbol | |
|---|
| ID | 8380848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1811396 |
|---|
| End bp | 1812565 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645004430 |
|---|
| Product | D-alanine/D-alanine ligase |
|---|
| Protein accession | YP_003161630 |
|---|
| Protein GI | 256832903 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
|---|
| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.344983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00583012 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA TGTCCACATC TCAGACGCGC CCCAATAATC TGGGGGCTCC CCACGCGGCG
GATCGTGTCC GCACTCGCGT TCTTGTCCTG TTTGGGGGCC GCTCCGGTGA GCACCCTATT
TCGTGTATCA CTGCCGCGGG TGTGTTGCGT GCTATTGACC GTGACCGGTT TGATGTGGTT
GCGGTGGGCA TCACCCAGGG GGGAAAGTGG GTGTTGGCGT CCACTGATCC TGATGAGGTG
GTGACCTCGG GTGACGATCT ACCTCACGTG GCGGACAACG GTACCGAGGT GTTGTTGCCC
TTTGCCTCGG GTGACAACGA GGTGCGGGTC ATCCGCGATG GTGTTCTTGA GTCGGTAGGA
CCTGTTGATG TAGTGCTGCC GTTGCTGCAT GGCCCATTTG GTGAAGATGG CACAGTGCAG
GGCATGTTGG AGCTCGCTGA CCTACGGTAT GTGGGTGTGG GGGTGCTGGG CTCTGCTGTG
GGGATGGACA AGCACTACAT GAAGCTTGTT TTTGAAGGAC ATGGCCTTCC AGTAGGGCCG
TATACCACTG TGTTTCCCGG GCAGTGGCAG CGTGACCCGG ATGAGGTTCG TGCCCGGGTT
GTGGCGTTGG GGTTGCCTGT TTTTGTGAAG CCGACTCGTG CGGGCTCATC ATTGGGGATT
TCGAAGGTCT CCGATGTGGG TGATCTTGAC CGGGCGATGG CTGAGGCGCT CAAGCATGAC
CCGAAGGTGA TTATTGAGGC GGGCATTGTC GGCCGTGAGA TTGAGTGTGC TGTTCTTGGC
GGGCATGGGG ACACCCCGGC CCGAGCATCG CTTCCAGGTG AGATCACGAT GACTGGTAGC
GCCCATGAGT TTTATGACTT TGAGGCGAAG TACCTTGACG ATGCGTCAGC CCAGTTGAGT
TGCCCAGCTG AGTTGGATGA GACCACCACT GCGACCGTGC GTGAGGTGGC GGTTCGCGCT
TTTGACGCGG TGGGCGGGGA AGGGTTGTCT CGCGTTGACG TGTTTGTTCA AGAAGATGGT
GCAGTGGTGG TCAATGAGAT CAACACGATG CCGGGGTTCA CGCCGATTTC CATGTATCCG
CGGATGTGGG AGCGATCGGG TGTGTCGTAC ACCGAGTTGA TTTCGGAACT CATTGATCTT
GCGTTGGAGC GTCCGCTGGG TCTGCGTTAG
|
|---|
| Protein sequence | MENMSTSQTR PNNLGAPHAA DRVRTRVLVL FGGRSGEHPI SCITAAGVLR AIDRDRFDVV
AVGITQGGKW VLASTDPDEV VTSGDDLPHV ADNGTEVLLP FASGDNEVRV IRDGVLESVG
PVDVVLPLLH GPFGEDGTVQ GMLELADLRY VGVGVLGSAV GMDKHYMKLV FEGHGLPVGP
YTTVFPGQWQ RDPDEVRARV VALGLPVFVK PTRAGSSLGI SKVSDVGDLD RAMAEALKHD
PKVIIEAGIV GREIECAVLG GHGDTPARAS LPGEITMTGS AHEFYDFEAK YLDDASAQLS
CPAELDETTT ATVREVAVRA FDAVGGEGLS RVDVFVQEDG AVVVNEINTM PGFTPISMYP
RMWERSGVSY TELISELIDL ALERPLGLR
|
|---|
| |