| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1648 |
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| Symbol | |
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| ID | 8380817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1777913 |
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| End bp | 1781353 |
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| Gene Length | 3441 bp |
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| Protein Length | 1146 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645004399 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003161599 |
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| Protein GI | 256832872 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.479186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00101634 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACTGG GCCATCGGAC GAAGGGGTTT GCAGCCGCCG CTGCAGGAGT TGCCCTGGTG
TCCACGACCT TCGCGACCGC ACAAGCGGCG CCTTTAACAA TGGAGCCGGC CGCCACCGAC
GCCGTTGTTG TTTCTGAAGA CTTCGAAGAA GGACTCGGGG TTTTTGGAGT TCGATACGGC
AACGGGAGCG CGCCAACCGT TGCTGTCAGC ACCGACTACG CGGCATCAGG TGTTGCGTCA
GCCAAAGTCA GCGACCGTGA TGTCAATGGT GATGGCATTG GACTAAACCC GGACGGCCTT
CTCGTGGCTG GAGGTGAATA CGAGTTTTCG GCAAACGTTA GATTCGCTGA AGGGGCTGAA
GGCGCAGTCT TGAGCCTCGG ATATAAATCC GACGACGGAG CCGATGTTGT GTATGACGGG
TTGATCTGGG ATCTTCCTGC TACATCAACT GAATGGTCGG CAGTTTCTGG AACATTCACG
CTGCCTGACA ATGTCGTCGA AGTTCATGTA GAGACGAAGT ATGACTCGGA GAACACCGAA
GATTTCTACA TTGACGATAT CGTTATCACT GATCTGAGTG CGACAGACGA GACCGGTGGC
GAGACCGGTG GCGAGACCGG TGGCGAGACC GGTGGCGACA CTGGGGAAGG TGACGCAACT
GGTGACACGA CCTCAGTGAC AACAAGCTTC GAAGACGGCA TGGGTGCCTG GGCGCAGCGC
TATGGAGGCG ACAGCTCCTT CACTGCTGAG CTTTCCGAGG ACTTTGCCTC TGATGGAACG
ACGTCAGTGA AGATCTCAGG CCGTGAGTTC GACGGTGACG GGATCGGTTT TGACGCTGAT
GGGGTTCTTG TCGAGGGTAA GCGTTACAAC TACTCGTTTG ATGTGCGGTT CGCGCCTGAT
GAGCCCGTTG GTGAAATCAC CGTGAGTTTC TTTGACGGCA CGGATGGCTA CAACACCGTT
CAGTCGGTCA CCAACGCGTC GAACACCGGG TGGACCACGG TGACGGGCAG CTACACGATT
CCGAGCTTCG AAGTTCCAGG TGCCCTGTTC TACATTGAAA CCAAATACGA GTCGGGAAAC
ACCTCGACCT TCTACGTGGA TAACGTCTCT TTCGCTGAAG CAACTGGTCT CCCTGTTCAA
GACCTCACCC CATTGAAGTC CACTGTGGAT ATTCCTGTTG GTGTGGCGAT TGATGAGCGT
GAAACCAGCG GGTTGGCTTC TGAGTTGCTG CTCAAGCACT TTGACCAGAT CACAGCTGAA
AACCACATGA AGCCCGATTA CTGGTATGAC GATGAGGGCA ACTGGTCTGG GCTGCACCCT
GAAGCGAAAG CCATGATGGA TTTCGCGGTC GCCAATGACC TGAAGGTTTA CGGTCACGTG
TTGGTGTGGC ACTCCCAAAC CCCGGAGTGG TTCTTCCAAG ACGCGAGCGG TGCACCGCTC
ACGGATAGTG CAGCAGACCA GCAGATCCTT CGGGACCGGA TGCGCACGCA CATCGACAAT
GTGGCCAAAG CGATCACAGA CGAGTACGGG CCGTTTGGTT CAGCAACAAA CCCGATCAAC
GCGTTTGATG TCATCAACGA GGTGGTCTCG GACTCGGGTG AGTACGCTGA TGGGTTGCGT
CGGTCTGAGT GGTACCGAAT TTTGGGTGAA GAGTTCATCA AACTGTCGTT TGATTACGCT
GAGGAACTGC TCAACGGCAC CTATGCGGCA TCAGGTGTGA GTAACCCGGT GAAACTGTTC
ATTAACGACT ACAACACGGA ACAGTCAGGG AAGCAGAACC GCTACTACGC ACTGGTTGAA
CGGCTTGTCG CCGCGGGCAC CCCAATCGAT GGGGTAGGGC ACCAAATGCA CGTGTCCCTG
GCCATGCCGG TGTCAGCGCT TTCTGGCGCG TTGGACCGTT TTGACGAGTT TGGTTTGCTC
CAGGCAGTGA CCGAGCTTGA CGTGACCACA GGGACCCCTG TGACGGACGC GAAGTTGGTG
GAGCAAGGGT ACTACTACCG TGACACCTTC ACCATGATCC GTGAGTTCGC TGCGGAGACT
GGCCGTTTGT GGTCGGCAAC CGTGTGGGGT CTGACCGATG GCCGTTCCTG GCGTGTGGAC
GATGGTGCTC CGATTCTCTT TGATGACGAC TACCAGGCGA AGCAGGCGTT CTACGGGGCA
ATCGACTCCG ATGAACTTGA CCCGATCATC CGTACCGCGA ATGTGTTCCA ACCCTCGATT
GACGATGTGT CAGTGACGTC AGCAGAGTGG GACCGGTTGC CCATGCACGA CGTTGAGGAT
GCAGGGTTCT TCCAACTGCG GTGGGGTTCG GATGCGCTGA CTGCTCTTGT GTATGTGGAT
GACCCTGACG CTGGTGCAGG TGACCGGGTG GAGTTCACCC TTGATGGTGA CACATGGTCG
GTCAACCGTG ACAGTGACTC GGTTGTTGAG TTTGACGGGT ACGGCTGGGC CTTTACCACT
CAGTTCGATG TTGCGGGCGC GGCAGCTGGT GACACTCACG ATTTCGATGT TCGGTTGGTG
AATGACGGTG ACACGGTGGG GTGGAACAGC CCAGGTGCCA CCGGTATTCT CACCCTCATT
GAACAGTTGT CGTACACCAC TGCGATTGAG GCGGACACTG CACCACAGAT TGATGGTGTG
ATGGACGATG TGTTCGCTGA CGCACAGTCG ATCACGACGG GTAAGCAGGT CAGCGGCACT
GATGGTGCCA CTGCGGACAC TCGTGCGGTG TGGAACGGGT CCACGTTGTA TTTGTTCGCT
GAGATCACTG ACCCTGACGT GGACGTCACC TCCGCATCTC CGTGGGAGCA AGACTCAGTG
GAGATTTACG TGGACATGGG GAACGCAAAG AATGGTTCCT ACCGTGATCT CGACACCCAG
ATCCGTATTT CGGCGCAGAA TGTTGTGTCG TTCGGTACTG GTGACGAGGC CATGCAGGAA
GCACGCATCA CCTCGGCTAC CGCTGCCACA GACACAGGGT ACATCGTTGA GGTGGCCATT
GATTTGGGTG ACGAGGGTGG TGCGGGCACG TTCCAGGGCT TCGATTTCCA GGTCAATGAT
GCGTCAGATG GTGCTCGCGC ATCCATCACG AACTGGGCTG ACCCAACGGG TGCAGGCTAC
CAATCCACGG CGCGTTGGGG TGTGATTGAA CTCCTTGCCG CTGATGAAGA TGGTGACCCT
GTTGTTCCTG GTGAGCCGAA CCTTCCAGGT TCTGGCGGGT CGGGCTCTGA TGGGGCAGGA
TCTGATTCTG ACTCTGGTTC TGATGATGGT GCTGCTGGGT CGGACACTGA GGACGGTGAC
AGTGATGGTT TAGCTGACAC TGGTGCGAAC CCGTTGCCCA TTATTCTCGG TGCGATTCTT
CTGGCACTTG CTGGTGGAGC GATCGTGGTA TTGCGTCGCC GTCTGGTGGG CGCGCAGGAC
AGCGATGAGT TGACCGTGTG A
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| Protein sequence | MKLGHRTKGF AAAAAGVALV STTFATAQAA PLTMEPAATD AVVVSEDFEE GLGVFGVRYG
NGSAPTVAVS TDYAASGVAS AKVSDRDVNG DGIGLNPDGL LVAGGEYEFS ANVRFAEGAE
GAVLSLGYKS DDGADVVYDG LIWDLPATST EWSAVSGTFT LPDNVVEVHV ETKYDSENTE
DFYIDDIVIT DLSATDETGG ETGGETGGET GGDTGEGDAT GDTTSVTTSF EDGMGAWAQR
YGGDSSFTAE LSEDFASDGT TSVKISGREF DGDGIGFDAD GVLVEGKRYN YSFDVRFAPD
EPVGEITVSF FDGTDGYNTV QSVTNASNTG WTTVTGSYTI PSFEVPGALF YIETKYESGN
TSTFYVDNVS FAEATGLPVQ DLTPLKSTVD IPVGVAIDER ETSGLASELL LKHFDQITAE
NHMKPDYWYD DEGNWSGLHP EAKAMMDFAV ANDLKVYGHV LVWHSQTPEW FFQDASGAPL
TDSAADQQIL RDRMRTHIDN VAKAITDEYG PFGSATNPIN AFDVINEVVS DSGEYADGLR
RSEWYRILGE EFIKLSFDYA EELLNGTYAA SGVSNPVKLF INDYNTEQSG KQNRYYALVE
RLVAAGTPID GVGHQMHVSL AMPVSALSGA LDRFDEFGLL QAVTELDVTT GTPVTDAKLV
EQGYYYRDTF TMIREFAAET GRLWSATVWG LTDGRSWRVD DGAPILFDDD YQAKQAFYGA
IDSDELDPII RTANVFQPSI DDVSVTSAEW DRLPMHDVED AGFFQLRWGS DALTALVYVD
DPDAGAGDRV EFTLDGDTWS VNRDSDSVVE FDGYGWAFTT QFDVAGAAAG DTHDFDVRLV
NDGDTVGWNS PGATGILTLI EQLSYTTAIE ADTAPQIDGV MDDVFADAQS ITTGKQVSGT
DGATADTRAV WNGSTLYLFA EITDPDVDVT SASPWEQDSV EIYVDMGNAK NGSYRDLDTQ
IRISAQNVVS FGTGDEAMQE ARITSATAAT DTGYIVEVAI DLGDEGGAGT FQGFDFQVND
ASDGARASIT NWADPTGAGY QSTARWGVIE LLAADEDGDP VVPGEPNLPG SGGSGSDGAG
SDSDSGSDDG AAGSDTEDGD SDGLADTGAN PLPIILGAIL LALAGGAIVV LRRRLVGAQD
SDELTV
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