| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1647 |
|---|
| Symbol | |
|---|
| ID | 8380816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1776290 |
|---|
| End bp | 1777777 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645004398 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003161598 |
|---|
| Protein GI | 256832871 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.187163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.001175 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTCAAAA CCTTCCACGT GGAATATTTT GGCCGGTTGT CCGCTACGCT GGGGTCCATG
GGTGATTCAA CACACACGTC AGTTGGGGTG TCACCGCAGG GGGATGCACC GTTGTCGCGG
GCAACGATTG TGCGTTATGC GGTTGGCTCG GTGGGCACAG GCGGTTTTGG GACGCTGCCT
GGTTTGGTCC TCATCTATTT TTTGACTGAC ACACTGGGGG TGGCAGCTGG CCTAGCAGGG
TTGGTGGTTA TCGCATCGAA AGTTGTGGAC GTCCTGATCG ACCCGGTGAT CGGGGATATC
TCCGATGCGA GTGCCCGGCG TCGTGGCACG CGCGGCTACC TGATGTGGTG GGGTGCGCTC
GCGTTGCCGG TGTTTTTTGT TCTCACTTTC GCGGTGCCGC CGGGGCTTGA GGGGGCTGGT
GCTGCGCTGT GGGTGATGGT GGCGTTCATC GGATGCGCGG TGGGGTTTTC GTTGTTTCAG
GTGCCCTATA TTGCGTTGCC GGTGGAGCTG ACAGGCCATT ATGACGAACG GACCCGACTG
TTAGCGTGGC GGGTTGTGGT GTTGTCGGTC GCGATTTTGT TGTTTGGTGG CGGTGGGCCG
GTGTTGCGGT CGTTGGGTGG GGATAACCAG CGGTTGGGGT ATGTCCTCAT GGCGGTGGTT
GCTGGCCTGG TTATTGGGCT GGGGTTTGCG GTGGCGGCGA AAGTTGCGCC GCGCCGCCCC
CCACAACACG CTCCGAGGGG GACAGCGGAA CTACGACACG GCTCACGGTT ACTGACGGGT
CGCATGACCC GGTTAGGCAG CCAGTACCGT GCCGGTCTGG ACACGCTCCG CACCAACCAG
CCGTTCCGGG TCCTTGTGCT CACGTTTTTC CTCCAAGCAG CAGCCACCGG GATCATGCTT
GCAGGAGCCC AGTATGTGGC TACCTGGGTA CTCGACTCAG AAGCTGCCGT GACATTCCTT
TTTGTTGCGC TCATTGCCCC AGCAGTGATC ATGTCCCCGG TGTGGGGTGC GGTGGCGCGG
CGTGTGGGTA AAGAAAAGGC CTTCAGTTGG GCGTCGCTGA TCTTCATGGC AGGCTCAGTG
TCCCTTGTGC TCCTCCTGGT AGCCCCCGGC CCCTGGGTGT ACGTTCCGGT GGCCGTGTGT
GGGGCCGCCT ACGCAGGGTT GCAAGCACTG CCCATGGCGA TGCTCCCTGA CACCGTCCCC
GTCCGTACCG AATCCCAAGC CGGCGTCTAC GGCGGAGTAT GGACAGCGGG GGAGACCACG
GGTATGGCCC TAGGCTCTGT AGCCCTCACC GTTGTGCTCG CTGCAACCGG GTACATCGAA
TCAACCGCCA CCCAGAACGT CACCCAACCT GACAGTGCAG TTGGTGGGAT CGTGGTGGCA
TTCAGTGTCA TTCCCGCCCT GGCCGTCGCA GTGTCCCTTG TGTCATTGCG CGCCTACCCG
CTGCGCCGAG CTGACATCAT GGCCGCGAAC GTGAAGGAGT ACCAGTGA
|
|---|
| Protein sequence | MVKTFHVEYF GRLSATLGSM GDSTHTSVGV SPQGDAPLSR ATIVRYAVGS VGTGGFGTLP
GLVLIYFLTD TLGVAAGLAG LVVIASKVVD VLIDPVIGDI SDASARRRGT RGYLMWWGAL
ALPVFFVLTF AVPPGLEGAG AALWVMVAFI GCAVGFSLFQ VPYIALPVEL TGHYDERTRL
LAWRVVVLSV AILLFGGGGP VLRSLGGDNQ RLGYVLMAVV AGLVIGLGFA VAAKVAPRRP
PQHAPRGTAE LRHGSRLLTG RMTRLGSQYR AGLDTLRTNQ PFRVLVLTFF LQAAATGIML
AGAQYVATWV LDSEAAVTFL FVALIAPAVI MSPVWGAVAR RVGKEKAFSW ASLIFMAGSV
SLVLLLVAPG PWVYVPVAVC GAAYAGLQAL PMAMLPDTVP VRTESQAGVY GGVWTAGETT
GMALGSVALT VVLAATGYIE STATQNVTQP DSAVGGIVVA FSVIPALAVA VSLVSLRAYP
LRRADIMAAN VKEYQ
|
|---|
| |