| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1589 |
|---|
| Symbol | |
|---|
| ID | 8380758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1712156 |
|---|
| End bp | 1714588 |
|---|
| Gene Length | 2433 bp |
|---|
| Protein Length | 810 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645004339 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_003161540 |
|---|
| Protein GI | 256832813 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC TCACCGACGA GACCCTCACA ATCATTGACC GGTGGTGGCG CGCAGCCAAC
TACCTCTCAG TCGGGCAAAT CTACCTGCTC GACAACCCGC TGCTCCGCAC GCCACTGAGC
CGCGACGATG TGAAACCCCG TCTCCTCGGC CACTGGGGAA CAACCCCAGG CCTCACGTTC
CTCTACGCTC ACCTCAACCG GGTGATCAAG GAACGTCAAC AATCCACCCT GTACATCACG
GGACCCGGCC ACGGAGGCCC AGGACTCGTT GCAGGTGCCT ACCTTGACGG GACGTACTCC
GAGATCTACT CGGACATCAC CGAAGACACC GAAGGGCTAC AAAAACTGTT CAAACAGTTC
TCCTTCCCCG GTGGTATCCC CTCCCACGTC GCACCAGAAA CACCCGGGTC TATCCACGAA
GGTGGTGAAC TCGGATACGC GCTCTCACAC GCCTACGGAG CCGCATTCGA CAACCCTGAC
CTCCTTATTG CAGCAGTTGT CGGTGACGGT GAAGCCGAAA CCGGGCCCCT AGCGACCAGC
TGGCACTCCA ACAAGTTCAT CAACCCAGCC ACCGACGGGA CAGTGCTGCC CATCTTGCAC
CTCAACGGGT ACAAGATCGC CAACCCCACC GTCCTTGACC GCATCTCACG CGACGAACTC
GAAGCGCTCA TGGTCGGGTA CGGGCACAAA CCCCACTTCT TCGAAGCAGG ATACGACGAC
GAAGACGCAT CATCATTCCA CCGCCGGTTT GCTGAGCTTC TCGACACCGT ATTGGATGAG
ATTGCGGCCA TTAAAGAACG CGCAGCACAG GGCGACGAAT CACGGCCACA ATGGCCCATG
ATCGTGTTCC GCACCCCCAA AGGATGGACC GGCCCAGCCA CCATTGATGG GAAGAAGACA
ACTGGTTCGT GGCGAGCACA CCAAGTTCCT TTGGCTAGTG CACGCGACAC CGACGAACAC
CTCCAGGACC TCAACGCCTG GTTGCAAAGC TACCGGCCCG ACGAACTCTT TGACGAGAAC
GGAAAAGTTG CTCAAGACAT TGCCAGCCTG ACGCCCAAGG GTGACCTGCG CATGAGCGCA
AACCCCCACG CCAACGGTGG GGTACTCATG AAGGAGCTGC GCCTTCCCCC CATTGAAGAC
TTCGCTGTGG ACGTCCCCAC ACCAGGGTCA ACCATCTCAG AAGCACCCCG TGTGCTGGGG
TCCTACCTCA CCGAAGTGAT CCGTAGAAAC CCAGATAACT TCCGGATCTT TGGCCCCGAT
GAGACCGCGT CCAACCGGCT CCAAGGCGTT TACGATGTCA CCGACAAACA ATGGAACGCT
GAGTTCTTTG ACGGTGACAC CGACGAACAC ATGGCCCGCA AAGGACGCGT TGTCGAGATG
CTGTCCGAAC ACCAGTGCCA AGGATGGTTG GAAGGCTACC TCCTCACCGG CCGTCACGGG
CTGATGACCT CCTACGAAGC GTTCATTCAC ATCGTGGATT CCATGTTCAA CCAGCACGCC
AAATGGTTGA AGGTCACCAA CCACATTCCG TGGCGCCAAC CCATCCCGTC ACTGAACTAC
TTGTTGTCCT CACACGTGTG GCGCCAAGAC CACAACGGGT TCTCCCACCA AGACCCCGGG
TTCATTGACC ACGTGGTGAA CAAAAAGGCT GAGGTCGTGC GGGTGTACCT TCCCGCTGAC
GCCAACACTT TGCTCTCCAC ATACGAGCAC TGCCTCAAGT CGCGTCAGTA CGTCAACGTT
GTGGTAGCTG GAAAACAACC AGCACCAAAC TTCCTCTCCA TGGACGAAGC CAAAGCACAC
TGCGAACGCG GGTTAGGCAT TTGGGAATGG GCCGGCACCG AAACACCGGG GCAAGACCCT
GATGTCGTGC TTGCCGCAGC TGGTGACGTG CCCACCCTTG AGGTCCTTGC AGCAGCAGAC
ATTTTGCGCC GCGAACTGCC CGACCTGAAG GTCCGTGTGG TCAACGTCGT TGACCTCATG
CGGTTGCAGG ACGAAAACGA GCACCCACAC GGGTTGACTG ACCGTGACTT TGACACGATC
TTCACCCGCA ACAAGCCAGT GATTTTTGCA TACCACGGAT ACCCATGGCT TATTCACCGC
CTTACCTACC GGCGTAACGG CCACGAGAAC ATTCACGTGC GCGGCTACAA GGAAGAAGGC
ACCACGACCA CACCATTCGA CATGGTCATG CTCAACGACT TGGACCGGTT CCACCTGGTC
ATCGATGTCA TTGACCGGGT CAAAGGATTG GGTCAGAAGT ACGCTGGGCT TCGTCAAAAG
ATGGAAGACG AACGGATTCG TGCCCGTGCA TACACCCGCG AACACGGACA AGACCTCCCC
GAAGTTCGCA ACTGGGTGTG GCCTGATGCC GCCAACCAAG CTGATGGTGA AAAAGTCGAT
GCGACCCTCG ACACCGGTGG CGACAACGAG TAA
|
|---|
| Protein sequence | MSELTDETLT IIDRWWRAAN YLSVGQIYLL DNPLLRTPLS RDDVKPRLLG HWGTTPGLTF
LYAHLNRVIK ERQQSTLYIT GPGHGGPGLV AGAYLDGTYS EIYSDITEDT EGLQKLFKQF
SFPGGIPSHV APETPGSIHE GGELGYALSH AYGAAFDNPD LLIAAVVGDG EAETGPLATS
WHSNKFINPA TDGTVLPILH LNGYKIANPT VLDRISRDEL EALMVGYGHK PHFFEAGYDD
EDASSFHRRF AELLDTVLDE IAAIKERAAQ GDESRPQWPM IVFRTPKGWT GPATIDGKKT
TGSWRAHQVP LASARDTDEH LQDLNAWLQS YRPDELFDEN GKVAQDIASL TPKGDLRMSA
NPHANGGVLM KELRLPPIED FAVDVPTPGS TISEAPRVLG SYLTEVIRRN PDNFRIFGPD
ETASNRLQGV YDVTDKQWNA EFFDGDTDEH MARKGRVVEM LSEHQCQGWL EGYLLTGRHG
LMTSYEAFIH IVDSMFNQHA KWLKVTNHIP WRQPIPSLNY LLSSHVWRQD HNGFSHQDPG
FIDHVVNKKA EVVRVYLPAD ANTLLSTYEH CLKSRQYVNV VVAGKQPAPN FLSMDEAKAH
CERGLGIWEW AGTETPGQDP DVVLAAAGDV PTLEVLAAAD ILRRELPDLK VRVVNVVDLM
RLQDENEHPH GLTDRDFDTI FTRNKPVIFA YHGYPWLIHR LTYRRNGHEN IHVRGYKEEG
TTTTPFDMVM LNDLDRFHLV IDVIDRVKGL GQKYAGLRQK MEDERIRARA YTREHGQDLP
EVRNWVWPDA ANQADGEKVD ATLDTGGDNE
|
|---|
| |