Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1540 |
Symbol | |
ID | 8380709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 1654710 |
End bp | 1656470 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 645004290 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_003161491 |
Protein GI | 256832764 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCCT CTGACCAACA ACCCTCTCCA ATGCCGATGC ACAAGTATGT GCCATTTGAC CGCCAGATCA CTGTGGATCT GCCGGATCGA ACCTGGCCAT CACGCACTAT CACTCGTGCG CCACGTTGGT GCGCAGTCGA CCTGCGAGAT GGGAACCAAG CCCTCATCGA ACCGATGAAT GCTGAACGTA AACTGCGGAT GTTTCAGCTT CTTGTGTCGA TGGGGTTCAA AGAAATTGAG GTGGGCTTCC CGTCTGCCTC TCAAACTGAT TTCGATTTTG TGCGTCTTCT CATTGAGGGT AACCACATCC CTGACGATGT GGTCATCCAA GTTCTCACTC AAGCCCGGGA ACACTTGATT GCCCGGACCT ATGAGTCGTT GCGTGGGGCG AAACAGGCCA TTGTTCACCT GTACAATTCC ACGTCCATTG TGCAGCGTGA GGTTGTGTTC CGTTCTGATG AGGACGGTAT CGTCGACATC GCCTTGGAAG GCGCCCGCCT GTGCAAGAAG TTCGAGGACA CAATCCCCGA CACCGATATC TATTACGAAT ACTCCCCAGA GTCGTACACA GGCACTGAAC TGGAGTTTGC GGTTCGTATC TGTAATGAAG TGCTGGATGT GCTGGAACCA CGTGAGTCAC GGCCGGTGAT CATCAATTTG CCTGCAACCG TAGAAATGGC GACACCGAAC GTCTACGCGG ATTCGATTGA ATGGATGAGC CGACACCTCA AATACAGGGA GCACGTCGTG TTGTCGCTGC ATCCCCACAA TGACCGGGGA ACGGCAGTTG CTGCCGCGGA ATTGGGTTAC ATGGCTGGTG CGGACCGAAT TGAAGGATGC CTGTTCGGAA ATGGTGAACG CACGGGCAAC GTCGACTTGG TGACGTTGGG GATGAACTTG TTCAGCCAGG GCATTGACCC CCAGATCGAT TTCTCTGACA TCGATACAAT TCGTCGCACA GTTGAGTATT GCAATCAAAT GCCGGTTCCA GACCGGCATC CCTATGCGGG TGACCTTGTT TTCACAGCCT TTTCTGGATC GCATCAAGAT GCGATCAAGA AGGGTCTGGA GTCGATGGAG GCGCGGGCAC AAGCAGCCGG CTGCTCAGTC GATGACTTGG TATGGGCTGT CCCGTATCTG CCCATCGATC CAAAAGACGT CGGGCGCAGT TACGAAGCTG TGATCCGTGT GAACTCGCAG TCTGGAAAGG GAGGGGTGTC TTACCTCCTC AAAACAGAAC ATCACATGGA CTTGCCGCGG CGTTTGCAAA TTGAGTTTTC CCGTGTCGTG CAAACAGTCA CAGACGAACA GGGCCGTGAG GTCACAGGCG AAGACATTTG GCGCATCTTC TGTGATGAAT ACTTGCCTGT CACGGAAGGA TCCGGGTTGG CGCCATGGGG CCGATTTGCA TTGGAAGGTA CGCGAACAGT GTCAGCTCAG GGGCAGGAAG ACACCCTGGA AATTGACCTC ATTGACCAGG GTGAGCGGGT GACACTGACC GGGATGGGCA ATGGTCCCAT TGATGCTTTT GTGCAGGCCC TGTCTGCCTA TGGGGTGGAC GTCACAGTCT TGGATTACTC GGAGCACGCG TTGTCCTCAG GAGGCGACGC ATCGGCTGCT GCATATGTCG AATGTCGGGT ATCTGACGAG GTGTTGTTCG GGGTGGGGAT TGACCCATCA ATCACCACGG CCTCACTCAA GGCGATCATC TCCGCAGTGA ACAGGCAAGG ACGTCACCCG CAGCCTGAGG ATCGCCGCTG A
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Protein sequence | MSASDQQPSP MPMHKYVPFD RQITVDLPDR TWPSRTITRA PRWCAVDLRD GNQALIEPMN AERKLRMFQL LVSMGFKEIE VGFPSASQTD FDFVRLLIEG NHIPDDVVIQ VLTQAREHLI ARTYESLRGA KQAIVHLYNS TSIVQREVVF RSDEDGIVDI ALEGARLCKK FEDTIPDTDI YYEYSPESYT GTELEFAVRI CNEVLDVLEP RESRPVIINL PATVEMATPN VYADSIEWMS RHLKYREHVV LSLHPHNDRG TAVAAAELGY MAGADRIEGC LFGNGERTGN VDLVTLGMNL FSQGIDPQID FSDIDTIRRT VEYCNQMPVP DRHPYAGDLV FTAFSGSHQD AIKKGLESME ARAQAAGCSV DDLVWAVPYL PIDPKDVGRS YEAVIRVNSQ SGKGGVSYLL KTEHHMDLPR RLQIEFSRVV QTVTDEQGRE VTGEDIWRIF CDEYLPVTEG SGLAPWGRFA LEGTRTVSAQ GQEDTLEIDL IDQGERVTLT GMGNGPIDAF VQALSAYGVD VTVLDYSEHA LSSGGDASAA AYVECRVSDE VLFGVGIDPS ITTASLKAII SAVNRQGRHP QPEDRR
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