Gene Jden_1540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_1540 
Symbol 
ID8380709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp1654710 
End bp1656470 
Gene Length1761 bp 
Protein Length586 aa 
Translation table11 
GC content55% 
IMG OID645004290 
Product2-isopropylmalate synthase 
Protein accessionYP_003161491 
Protein GI256832764 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00970] 2-isopropylmalate synthase, yeast type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCCT CTGACCAACA ACCCTCTCCA ATGCCGATGC ACAAGTATGT GCCATTTGAC 
CGCCAGATCA CTGTGGATCT GCCGGATCGA ACCTGGCCAT CACGCACTAT CACTCGTGCG
CCACGTTGGT GCGCAGTCGA CCTGCGAGAT GGGAACCAAG CCCTCATCGA ACCGATGAAT
GCTGAACGTA AACTGCGGAT GTTTCAGCTT CTTGTGTCGA TGGGGTTCAA AGAAATTGAG
GTGGGCTTCC CGTCTGCCTC TCAAACTGAT TTCGATTTTG TGCGTCTTCT CATTGAGGGT
AACCACATCC CTGACGATGT GGTCATCCAA GTTCTCACTC AAGCCCGGGA ACACTTGATT
GCCCGGACCT ATGAGTCGTT GCGTGGGGCG AAACAGGCCA TTGTTCACCT GTACAATTCC
ACGTCCATTG TGCAGCGTGA GGTTGTGTTC CGTTCTGATG AGGACGGTAT CGTCGACATC
GCCTTGGAAG GCGCCCGCCT GTGCAAGAAG TTCGAGGACA CAATCCCCGA CACCGATATC
TATTACGAAT ACTCCCCAGA GTCGTACACA GGCACTGAAC TGGAGTTTGC GGTTCGTATC
TGTAATGAAG TGCTGGATGT GCTGGAACCA CGTGAGTCAC GGCCGGTGAT CATCAATTTG
CCTGCAACCG TAGAAATGGC GACACCGAAC GTCTACGCGG ATTCGATTGA ATGGATGAGC
CGACACCTCA AATACAGGGA GCACGTCGTG TTGTCGCTGC ATCCCCACAA TGACCGGGGA
ACGGCAGTTG CTGCCGCGGA ATTGGGTTAC ATGGCTGGTG CGGACCGAAT TGAAGGATGC
CTGTTCGGAA ATGGTGAACG CACGGGCAAC GTCGACTTGG TGACGTTGGG GATGAACTTG
TTCAGCCAGG GCATTGACCC CCAGATCGAT TTCTCTGACA TCGATACAAT TCGTCGCACA
GTTGAGTATT GCAATCAAAT GCCGGTTCCA GACCGGCATC CCTATGCGGG TGACCTTGTT
TTCACAGCCT TTTCTGGATC GCATCAAGAT GCGATCAAGA AGGGTCTGGA GTCGATGGAG
GCGCGGGCAC AAGCAGCCGG CTGCTCAGTC GATGACTTGG TATGGGCTGT CCCGTATCTG
CCCATCGATC CAAAAGACGT CGGGCGCAGT TACGAAGCTG TGATCCGTGT GAACTCGCAG
TCTGGAAAGG GAGGGGTGTC TTACCTCCTC AAAACAGAAC ATCACATGGA CTTGCCGCGG
CGTTTGCAAA TTGAGTTTTC CCGTGTCGTG CAAACAGTCA CAGACGAACA GGGCCGTGAG
GTCACAGGCG AAGACATTTG GCGCATCTTC TGTGATGAAT ACTTGCCTGT CACGGAAGGA
TCCGGGTTGG CGCCATGGGG CCGATTTGCA TTGGAAGGTA CGCGAACAGT GTCAGCTCAG
GGGCAGGAAG ACACCCTGGA AATTGACCTC ATTGACCAGG GTGAGCGGGT GACACTGACC
GGGATGGGCA ATGGTCCCAT TGATGCTTTT GTGCAGGCCC TGTCTGCCTA TGGGGTGGAC
GTCACAGTCT TGGATTACTC GGAGCACGCG TTGTCCTCAG GAGGCGACGC ATCGGCTGCT
GCATATGTCG AATGTCGGGT ATCTGACGAG GTGTTGTTCG GGGTGGGGAT TGACCCATCA
ATCACCACGG CCTCACTCAA GGCGATCATC TCCGCAGTGA ACAGGCAAGG ACGTCACCCG
CAGCCTGAGG ATCGCCGCTG A
 
Protein sequence
MSASDQQPSP MPMHKYVPFD RQITVDLPDR TWPSRTITRA PRWCAVDLRD GNQALIEPMN 
AERKLRMFQL LVSMGFKEIE VGFPSASQTD FDFVRLLIEG NHIPDDVVIQ VLTQAREHLI
ARTYESLRGA KQAIVHLYNS TSIVQREVVF RSDEDGIVDI ALEGARLCKK FEDTIPDTDI
YYEYSPESYT GTELEFAVRI CNEVLDVLEP RESRPVIINL PATVEMATPN VYADSIEWMS
RHLKYREHVV LSLHPHNDRG TAVAAAELGY MAGADRIEGC LFGNGERTGN VDLVTLGMNL
FSQGIDPQID FSDIDTIRRT VEYCNQMPVP DRHPYAGDLV FTAFSGSHQD AIKKGLESME
ARAQAAGCSV DDLVWAVPYL PIDPKDVGRS YEAVIRVNSQ SGKGGVSYLL KTEHHMDLPR
RLQIEFSRVV QTVTDEQGRE VTGEDIWRIF CDEYLPVTEG SGLAPWGRFA LEGTRTVSAQ
GQEDTLEIDL IDQGERVTLT GMGNGPIDAF VQALSAYGVD VTVLDYSEHA LSSGGDASAA
AYVECRVSDE VLFGVGIDPS ITTASLKAII SAVNRQGRHP QPEDRR