Gene Jden_1527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_1527 
Symbol 
ID8380696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp1641600 
End bp1642838 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content57% 
IMG OID645004277 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003161478 
Protein GI256832751 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2182] Maltose-binding periplasmic proteins/domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.207567 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAGAG GCATCCCAGC AACAGCTGCA GCACTCGGTA TGGCACTTGT TCTCGCGTCC 
TGCTCCGGCG GTTCCGACAA CAACGACAAC GAGCCCACCG CGAGCGAATC AACGGGCGTT
GCCGGCAGCA TGACAATCTG GGTCGACGAA ACTCGAATCA ACGACTTTGA ATCCGTCATC
CAGAAGTTCG CTGATGAGCG AGGTGTCGAC GTTCAGGTTG TGCAAAAGGC ATCCGGTGAC
ATCCGCACCG AATTCGTCCA ACAAGTTCCC ACTGGTGAAG GCCCAGACGT CATCATCGGT
GCGCACGACT GGCTCGGCGA GTTCGTGTCC AACGGTGTTG TCGCCCCAGT TGAACTGGGT
GACAAGGCTG CTGGCTTCGC CGAAGCAGCA ACCAAAGCGT TCGCCTACGA AGGCACAAAC
TACGGTGTCC CGTACGCAAT TGAATCCATT GCCCTGGTCC GCAACGACGA ACTTGCCACC
GAAACCCCTG CCACGTTCGA CGAACTGATC GAACAAGGCA AGGAACTGGA CGCCAAGTAC
CCCGTTCTCT TGCAGCAGGG TGCTGAAGGC GACGCCTACC ACATGTACCC ACTGCAGACA
TCCTTCGGTG CACCCGTGTT CACCTCCGAG GACGACGGTT CTTACACGAC GGAACTCGGT
ATGGGCGGCG AAGCTGGACA CAACTTCGCT GAGTACCTGA AGAAGCTTGG TGGCGAGGGA
ATCCTCGACT CCAACATCGG TGGAGACCAG GCAAAAGAAG CCTTCATAAA GGGAGAGTCC
CCTTACATCA TCACCGGCCC TTGGTACGCC AATGAATTTG CTGCTGAAGG CATGACGATC
TCGGTCCACG AGGTTCCGTC TGCTGGTGGA GAACCTGCAC AACCATTTGT CGGAGTGCAA
GGCGCGTACA TCTCTGCTAA GGCAAACAAC CCTGTTCTTG CCCAGGACTT CGTGGTGAAC
TACCTCTCCA CTGAAGAAGC AGCAGATGAA ATCCACGCAG CAGGTGGGCG AGTGCCAGCC
TTGACTGCAT CAGCTGACAA AATGACGGAC GAGCTTGCGA AATCCTTTGG TGAAGTGGCC
GCAGCGGGTG CTCCTATGCC ATCCATCCCA GAAATGGGAT CTGTGTGGGC TTACTGGGGT
GCGACCCAGG TGGCGATCTT CACCGGTCAA GAAAAGGACC CCGTAGCTGC ATGGGACCGC
ATGCTGGAAA ACATCAACAG TGAGATCGCC GGAGGCTAA
 
Protein sequence
MQRGIPATAA ALGMALVLAS CSGGSDNNDN EPTASESTGV AGSMTIWVDE TRINDFESVI 
QKFADERGVD VQVVQKASGD IRTEFVQQVP TGEGPDVIIG AHDWLGEFVS NGVVAPVELG
DKAAGFAEAA TKAFAYEGTN YGVPYAIESI ALVRNDELAT ETPATFDELI EQGKELDAKY
PVLLQQGAEG DAYHMYPLQT SFGAPVFTSE DDGSYTTELG MGGEAGHNFA EYLKKLGGEG
ILDSNIGGDQ AKEAFIKGES PYIITGPWYA NEFAAEGMTI SVHEVPSAGG EPAQPFVGVQ
GAYISAKANN PVLAQDFVVN YLSTEEAADE IHAAGGRVPA LTASADKMTD ELAKSFGEVA
AAGAPMPSIP EMGSVWAYWG ATQVAIFTGQ EKDPVAAWDR MLENINSEIA GG