| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1427 |
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| Symbol | |
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| ID | 8380600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 1535363 |
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| End bp | 1536877 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645004177 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_003161382 |
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| Protein GI | 256832655 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.744088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGAAC TCCTCGAGAC CGGAACGGCT CACGGCCGTG TTGGCGCTCA GGAGTTTCGT
CACGCTTGTG AGCAGGCTGA CATTAGTGAG CCAAAGCGCC TCAAGGCGGT GTTTCGTGCA
CTTGTGATGG CTGGGGTTGA TGTGGAAATG CCCGCTGAAC CGACAAAGGT CGCTGCAGCC
GCTCGTACTC GTGCTACAAG CGCAACGGCA CGGGCTCCGC AAAGCAACAC TGCACGAACA
GCGTCGTCAT CACGCACTAG CACGATACAA CCAACGTCTG GAGATGACGT GTCTTCCACG
ATGACCACCC CCGAAGAAGC CGAGTCACAG GGTGAACTCG GTGGAAAAAA GCCGGCCACA
ACGGCGAAGC GGCGAACCAA AAAATCTGCT GCTGCCACCA AAGAAACAGC GTCATCCTCA
TCGTCTGCGG CAGAACCAGA AGAGCTCGAC GCAGCGGAGG GCAGCGACGA GGCGGCAGCA
GGCCGAGCGA ACGGCACACG TAAGAGCGGC GCGAAGAGCG ATGAGGAAGA AGAAGGCGCA
GGCTTTATTT ACTCTGACGC CGATGACGAT GACGCTCCCG CGCAGCAGGT TGTCACCGCT
GGTGCAACTG CGGATCCCGT CAAGGATTAT CTCAAGCAAA TCGGTAAAGT TGCGCTCCTG
AATGCTGAGC AAGAAGTCGA GCTCGCTAAG CGTATTGAGG CAGGGCTCTA CGCTGAAGAG
CGTCTTGCTG CAGGTGTTGC TGAGGGAGAC CGTAAACTCG AACGCGAGTA CCGGTGGATC
ATCCAGGATG GCAAGCGAGC GAAGAATCAC CTCCTTGAAG CGAACCTCCG TTTGGTTGTT
TCTCTCGCGA AGCGGTACAC CGGGCGAGGA ATGCTTTTCC TAGACCTTAT TCAAGAGGGA
AACCTCGGTC TGATTCGTGC AGTCGAGAAG TTCGACTACA CCAAGGGGTA CAAGTTCTCG
ACCTACGCGA CGTGGTGGAT CAGGCAGGCA ATTACCCGAG CAATGGCTGA CCAGGCCCGC
ACGATCCGTA TCCCCGTGCA CATGGTTGAA GTCATCAACA AGCTTGCGCG CGTGCAACGT
CAAATGTTGC AGGACCTCGG GCGTGAACCG ACACCTGAGG AACTAGCAAA AGAATTGGAT
ATGACCCCTG AAAAGGTGGT CGAAGTGCAA AAGTATGGGC GTGAACCTAT TTCGTTGCAC
ACGCCGTTGG GTGAAGACGG TGACAGTGAG TTCGGTGACC TCATTGAGGA CTCTGAAGCA
GTAGTTCCTG CTGATGCGGT GTCATTCACG CTGTTGCAGG AGCAACTTCA CCAGGTATTG
GACACATTGT CGGAACGCGA AGCTGGCGTA GTGTCGATGC GTTTTGGGCT CACCGATGGT
CAGCCCAAAA CCTTGGACGA GATTGGCAAG GTCTATGGCG TGACCCGCGA GCGTATCCGG
CAAATCGAGT CAAAGACAAT GTCCAAGCTC CGTCACCCAA GTCGCTCTCA GGTACTGCGG
GATTACCTGG ACTAG
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| Protein sequence | MKELLETGTA HGRVGAQEFR HACEQADISE PKRLKAVFRA LVMAGVDVEM PAEPTKVAAA
ARTRATSATA RAPQSNTART ASSSRTSTIQ PTSGDDVSST MTTPEEAESQ GELGGKKPAT
TAKRRTKKSA AATKETASSS SSAAEPEELD AAEGSDEAAA GRANGTRKSG AKSDEEEEGA
GFIYSDADDD DAPAQQVVTA GATADPVKDY LKQIGKVALL NAEQEVELAK RIEAGLYAEE
RLAAGVAEGD RKLEREYRWI IQDGKRAKNH LLEANLRLVV SLAKRYTGRG MLFLDLIQEG
NLGLIRAVEK FDYTKGYKFS TYATWWIRQA ITRAMADQAR TIRIPVHMVE VINKLARVQR
QMLQDLGREP TPEELAKELD MTPEKVVEVQ KYGREPISLH TPLGEDGDSE FGDLIEDSEA
VVPADAVSFT LLQEQLHQVL DTLSEREAGV VSMRFGLTDG QPKTLDEIGK VYGVTRERIR
QIESKTMSKL RHPSRSQVLR DYLD
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