| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1420 |
|---|
| Symbol | |
|---|
| ID | 8381782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1526963 |
|---|
| End bp | 1528624 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645004170 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003161375 |
|---|
| Protein GI | 256832648 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.317309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.7717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTACCT GTCTTGACGT GCACACCAGG TATCCCTCCG GTTGGACCTC ACCACCACTG
ACAACACAAT TTCTCAGCGG AACCCTCACC CTGCTCGTGG GCGACATCGG CGTGGGAAAA
TCCACACTGC TGCGTACAAT CGCCGGAATA GCAACAGACG TTGACCACGC CACCGTTCAC
GGACGCATCA CAGTCAATGA CACAGACCTC ACTGCCACCA CAGCAGCCCA CCGAAGCGCT
TTCCTCGGTT ACGTGCCCTC CACACCCACA TCAGCTTTCC TCGCCGCCAC CGTCGAAGCC
CACCTGGCCT ACCCGCTCGA AAGCCGAGGA ATACCGCGCC CCATCATCGC TCAACGCATC
GCCGAAACAC TCAGTGCAGT GGGCGCAACT ACCCTGCGCT ACCGCAACGT TGACACCCTT
TCCGCAGGAC AAGCCCAACG CATCGCCATC GCAGGAGCCC TCACCCTGCA ACCCGCAGTT
CTCCTCTGCG ACGAACCCAC CACACTCCTG GACCCCCACT CAGCGCACGA CCTTGTCTCA
CTCCTGACCC GACTCGCCCA CGAGTACGGG ATCACAGTGA TCGCCGCCGA CCACCGCGTC
AGCAACTACC TTGATGCAGA CCACGCACTG CGCTTGACCA GCAACGGACA CGTCACCGGC
GACATCGGTG CCGTGCTGGC ACGCACACCC GCAGAACCCG TCACCCACAC CCTCACCACA
CGGTACACAG ACACCGCCCA CACCTCCGTT GGCGCCGCCC GACAGGCGCT CGCACCGCTG
TTGAACCACC CACCAACCAC CGCCCCCACA CCACCAACCA GCCCTGACCA GCCCAGCCCG
ACCCTAACCC TCAACGGCCT CACGGTTCAC TACATAGAAC GTGACCAACG TGGCACCCTC
CACCAACGAA CCGCACTGCA CCAGGTGAAC GCCACCGTCA ACGCAGGCGA CGTCATCGCT
GTACTCGGCT CCAACGGAGC AGGAAAAACA ACACTCCTCG CCGCCCTCAT CGACCCCACA
CTACGAACAG CAGGGCACCT CACCTGGCAC CACTCAACCA CCACCCCCGG CCCGCAACAC
CGCCGCCCAT TGTGGCTACC ACGCCGACGC ACACAGCCTT CCACCCCACC ATCACGATGC
GCCTACCTAC CAGCCCACGC ATCGATCATC CTGCTTCACC AACGCACCGA TGACGAATGC
GCAGCAGCCG ACGCCGAATG GAACCTCACC CCAGGGACCA CCTGGTCGCT TGCCAGTACC
CTCATCCCTA CCTTGAATCC CACCACCCAC CCACACGACC TTTCCCAAGG GCAACAACAC
CTGCTCGCGC TCGCAGTGAT GACAGCCGGG CACCCAGACA TCATCATCCT GGACGAACCC
ACCCGATCCC TGGATGCGCA GGCGACCGCT GAGGTGGAAA AGCTCATCAC CCAGTGGTCA
CAACAAGGGA TACCGGTGCT GATCGCTGGG CATGACGTTG ACTCAATGGC TCGGATAGCG
AACCGTGTGT GGTGGCTTGA TGCGGGTGAA CTTGTTGCTG ACACCACCCC ACGTGCCGCA
CTTGCTACCT CTCAGTTTTC CGCACCGCTT GTCACCCGGG TGTGCCACCC ACACCCAGTC
CTCACCCTTG AGGAAGCAAT CACCCTGTTC GAGGACCGAT GA
|
|---|
| Protein sequence | MLTCLDVHTR YPSGWTSPPL TTQFLSGTLT LLVGDIGVGK STLLRTIAGI ATDVDHATVH
GRITVNDTDL TATTAAHRSA FLGYVPSTPT SAFLAATVEA HLAYPLESRG IPRPIIAQRI
AETLSAVGAT TLRYRNVDTL SAGQAQRIAI AGALTLQPAV LLCDEPTTLL DPHSAHDLVS
LLTRLAHEYG ITVIAADHRV SNYLDADHAL RLTSNGHVTG DIGAVLARTP AEPVTHTLTT
RYTDTAHTSV GAARQALAPL LNHPPTTAPT PPTSPDQPSP TLTLNGLTVH YIERDQRGTL
HQRTALHQVN ATVNAGDVIA VLGSNGAGKT TLLAALIDPT LRTAGHLTWH HSTTTPGPQH
RRPLWLPRRR TQPSTPPSRC AYLPAHASII LLHQRTDDEC AAADAEWNLT PGTTWSLAST
LIPTLNPTTH PHDLSQGQQH LLALAVMTAG HPDIIILDEP TRSLDAQATA EVEKLITQWS
QQGIPVLIAG HDVDSMARIA NRVWWLDAGE LVADTTPRAA LATSQFSAPL VTRVCHPHPV
LTLEEAITLF EDR
|
|---|
| |