| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1392 |
|---|
| Symbol | |
|---|
| ID | 8380566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1489166 |
|---|
| End bp | 1490386 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645004143 |
|---|
| Product | 3'-5' exonuclease |
|---|
| Protein accession | YP_003161348 |
|---|
| Protein GI | 256832621 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.125783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.298063 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACACC AAGCAACGCA CCCCACCATC CCTGTGCTCA CGCACCCCCA AGATGGTCCC
GCAGACCTGG TGAACACCAC AGTGAGCTAC CAGGCGGCCC TGCGACGTCT AGACCGCGGT
CATGGCCCTT TCGCCGTCGA TGCAGAACGT GCCTCCGGGT ACCGGTATGG AGACCGCAAC
TACCTCATTC AAGTGCGCCG CGAAGGCGCG GGGACTTTCC TCATTGACCC CACAGCTGTT
GACGATTTCA GTGAACTCAA CGCTGTCATG GCCGCCGACA CCTGGATTTT CCACGCGGCT
ATCCAAGACC TTGGCCCACT ACGAGACCAG GGGCTGACCC CTGGCACCAT TTTTGACACC
GAAGTTGCTG CACGCTTATT GGGTCTTGAC CGTGTCAACC TCGCCGCGGT GACCGCCCAC
TTCCTGGGGG TCACGTTGGA AAAACAACAC TCCCACCAGG ACTGGTCCAC TCGCCCGCTA
CCCTCGTCAT GGCTCACCTA CGCAGCCCTT GACGTGGAGC TTCTTGGTGA TTTAGCGATC
AGTGAGACAG ACGCACTCAC CGAAACTCGC AAACTGAGGT GGGCTCACGA AGAGTTTGCC
TACATCCAAG CACAACGCGC CATTCACCGC CCTGACCCCT GGCGGCGCAC CTCGGGGATC
CAACGTGTCA CCGACCGCCG CAGGCTCGCA GTTGTCCAAC ATTTGTGGAA CGAACGCGAA
AAAATCGCAC GTTCGAAAGA CCTGGCCCCT TCACGCATCC TGTCAGACCG GGGCATCATC
GAAGCAGCAA TCACATTGCC TCGCACAGTA GGGGCGCTCC TGGCTATCCA TGAATTTGGT
GGTGCTGCCA ACCGGCGTCG ATCCCACCAA TGGCAACGCG CCATCAACCA CGCCCTGACA
CTGCCCTCCT CCGAACTGCC CCCACGGCGC CTGCCCGCCC CACCAAAACT ACCCCCACAC
AAAATTTGGG AAGAGAAGAA CCCGCTCGCA GCCACCCGGC TCACCGCAGC ACGCGAGTTC
CTCGATGAAC TCGCCGCCAC ACACCACCTA CCCGTGGAAA ACATCATCCA ACCTAAAGTG
GTGCGCCAAC TGCTGTGGGA CGCAACCACC ACTCCCATTG ACGTTCCCGC CTACCTGACG
AACAACCAGG TACGCCCATG GCAGCAAGAG CTCGTCGCGC AGACACTCAC CATGATCATT
GACACCATCA CAACACCCTG A
|
|---|
| Protein sequence | MSHQATHPTI PVLTHPQDGP ADLVNTTVSY QAALRRLDRG HGPFAVDAER ASGYRYGDRN
YLIQVRREGA GTFLIDPTAV DDFSELNAVM AADTWIFHAA IQDLGPLRDQ GLTPGTIFDT
EVAARLLGLD RVNLAAVTAH FLGVTLEKQH SHQDWSTRPL PSSWLTYAAL DVELLGDLAI
SETDALTETR KLRWAHEEFA YIQAQRAIHR PDPWRRTSGI QRVTDRRRLA VVQHLWNERE
KIARSKDLAP SRILSDRGII EAAITLPRTV GALLAIHEFG GAANRRRSHQ WQRAINHALT
LPSSELPPRR LPAPPKLPPH KIWEEKNPLA ATRLTAAREF LDELAATHHL PVENIIQPKV
VRQLLWDATT TPIDVPAYLT NNQVRPWQQE LVAQTLTMII DTITTP
|
|---|
| |