| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1359 |
|---|
| Symbol | aspS |
|---|
| ID | 8380536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1453986 |
|---|
| End bp | 1455764 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645004108 |
|---|
| Product | aspartyl-tRNA synthetase |
|---|
| Protein accession | YP_003161318 |
|---|
| Protein GI | 256832591 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0173] Aspartyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00459] aspartyl-tRNA synthetase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.340655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.727219 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCGCA CTCATCACGC TGGAACACTC ACAACCGCTC ACAAGGGGAA CACGGTCACG
CTCACCGGCT GGGTTGACCG GCGCCGCGAC CACGGGGGAG TAGCATTCAT TGACTTACGC
GATGCGTCAG GTGTCGCACA GGTCGTTATC CGTGACGAAG AGGTTGCCCA CCCATTGCGT
GCCGAGTACG TCCTCCAAGT GACCGGCACT GTCGAACAGC GTCCGCAAGG CAACAACAAC
CCGAACCTCC CGACCGGTGA GATTGAGGTG ATTGCCTCCC AGGTTGTGGT GCTTAATGAG
TCCACCGCCC TTCCGTTCCA AGTATCAACA GCGTTGGAGG GGACTGAAAC CATTGGTGAA
GAGGCTCGGT TGCGACACCG GTACCTCGAT TTGCGTCGTC CTCGACCCGC ACAGTTGTTG
AAACTACGAT CACAGGTGTC GCAAGCTGCT CGCCGTGTCC TTGACACTCA CGACTTCGTG
GAGATTGAAA CACCCACGTT GACCCGGTCC ACCCCGGAAG GCGCACGCGA CTTCCTCGTG
CCTGCTCGGT TAGCCCCAGG TTCATGGTAT GCGCTCCCAC AATCACCTCA GTTGTTTAAG
CAACTGCTGA TGGTCGCTGG AATGGAACGG TACTACCAGA TCGCACGGTG CTACCGTGAT
GAGGATTTCC GCGCCGACCG CCAACCAGAG TTCACACAGC TTGACATTGA GATGAGCTTC
GTTGAGCAGG ACGACGTTAT TGCGTTGGCT GAGGAGCTTC TCGCTAACAT TTGGGCATTA
ATTGGTGTTG ATCTCACCAC CCCCATTCCT CGAATCACTT ACCACGAGGC AATGCGTAAG
TATGGCTCGG ACAAGCCTGA CTTGAGGTTT GACCTGGAAA TCTCAGAGCT CACGGACTAT
TTCGCGAACA CCACGTTCCG GGTGTTCCAG GCCGAATATG TGGGTGCGAT TGTTATGCCT
GGGGGGGCTT CACAGCCGCG CCGTCAGTTC GATGCATGGC AAGAGTGGGC TCGTCAACGC
GGAGCAAAGG GTTTGGCGTA CGTCACCATT GCTGATGACG GAACGTTAGG CGGTCCTGTT
GCGAAGAACC TGACTGACAC CGAACGTGAC GGGTTGGCTG CAGCAACAGG CGCATCGCCA
GGTGACTGCA TTTTCTTTGC TGCTGGCCGT ACTGACGAGT CACGATCCTT GCTTGGTGCT
GCGCGTAATG AGATTGGTGA ACGAACCGGA CTCATTGATG ACGATGCGTG GGCGTTTGTG
TGGGTTGTTG ACGCACCGTT GTTTAAACCA GCAGGGCAAG ATGACGATGT GGACCTTGGC
TCCTCACAGT GGACCGCTGT TCACCACGCC TTTACTAGCC CAACACCAGA GTGGATTGAC
TCGTTTGACA CTGACCCGGG TCACGCGTTG GCATACGCCT ACGACATTGT GTGTAACGGC
AATGAGATTG GTGGCGGTTC CATCCGTATT CACCGGCGTG ACGTCCAAGA GCGTGTTTTC
CAGGTGATGG GTATTGGTGA GGAAGAAGCG CAAGAGAAGT TTGGGTTCCT CCTTGATGCG
TTCCAGTTTG GTGCCCCACC ACACGGGGGA ATCGCGTTTG GTTGGGACCG CATTGTGGCG
TTGTTGGGTC GTGCAGATTC CATTCGCGAT GTGATTGCAT TTCCAAAGTC AGGTGGCGGT
TTTGATCCGC TGACTGCGGC TCCTGCCCCG ATCACGGAGC AACAACGCAA GGAAGCTGGT
GTTGACGCGA AGCCTGAGGT TCCGGCGGAC GCCTCATAG
|
|---|
| Protein sequence | MLRTHHAGTL TTAHKGNTVT LTGWVDRRRD HGGVAFIDLR DASGVAQVVI RDEEVAHPLR
AEYVLQVTGT VEQRPQGNNN PNLPTGEIEV IASQVVVLNE STALPFQVST ALEGTETIGE
EARLRHRYLD LRRPRPAQLL KLRSQVSQAA RRVLDTHDFV EIETPTLTRS TPEGARDFLV
PARLAPGSWY ALPQSPQLFK QLLMVAGMER YYQIARCYRD EDFRADRQPE FTQLDIEMSF
VEQDDVIALA EELLANIWAL IGVDLTTPIP RITYHEAMRK YGSDKPDLRF DLEISELTDY
FANTTFRVFQ AEYVGAIVMP GGASQPRRQF DAWQEWARQR GAKGLAYVTI ADDGTLGGPV
AKNLTDTERD GLAAATGASP GDCIFFAAGR TDESRSLLGA ARNEIGERTG LIDDDAWAFV
WVVDAPLFKP AGQDDDVDLG SSQWTAVHHA FTSPTPEWID SFDTDPGHAL AYAYDIVCNG
NEIGGGSIRI HRRDVQERVF QVMGIGEEEA QEKFGFLLDA FQFGAPPHGG IAFGWDRIVA
LLGRADSIRD VIAFPKSGGG FDPLTAAPAP ITEQQRKEAG VDAKPEVPAD AS
|
|---|
| |