Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1292 |
Symbol | |
ID | 8380469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 1379902 |
End bp | 1382754 |
Gene Length | 2853 bp |
Protein Length | 950 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 645004041 |
Product | DEAD/DEAH box helicase domain protein |
Protein accession | YP_003161251 |
Protein GI | 256832524 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4581] Superfamily II RNA helicase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.459724 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCCGA AACGCTCACG GGTCCGTGAA CAGCGAAAAA AAGAAGCCCA AGCTGTCGAG CAACCACACC CTGAACAGGA ATTGAGCCCT GCGCAACGGT ACGCTCACCA CCAACGCACT CGTGCATACC CCCACCTGTC ACACTTCGCC ACAACACTGG ACTTCCCTTT GGATGAATTC CAGCATCAGG CATGTGAACA CCTCGAAAAA GGGGACGGTG TTTTGGTTGC AGCTCCCACA GGAGCGGGGA AAACCATCGT GGGGGAGTTC GCGGTTCACC TCGCCCTTCA ACAACACCGC AAAGCGTTTT ACACCACCCC CATCAAAGCG CTCTCGAACC AGAAATTTCA CGACCTTCAA CGTGTCCACG GTCCGCACAA CGTTGGATTG CTCACTGGTG ATGCGACAAT CAACGGCGAA GCACCCATTG TTGTGATGAC CACAGAGGTG CTGCGCAACA TGATTTACGC GCAGTCCACC ACGCTCGATA ATGTTGGCTA CGTCATCATG GATGAAGTCC ACTACCTTGC TGACAGGTTT CGCGGCGCAG TGTGGGAAGA AGTCATCATC CACCTCGACC GGTCGGTGCA ACTCGTCTCG CTGTCTGCCA CGGTATCCAA CGCGGAGGAG TTCGGGGACT GGCTCGCCGC AGTACGCGGT TCAACCGCTG TCATCGTTTC TGAGCGACGT CCCGTTCCAC TATGGCAACA CGTAATCACC CAAGGGCGGT CAGACAGCCC CGGTGGCCTC ATTGATTTGT ACGCTCACAC CGTCGACCCC ACTGATCCTG GTCCCACGCC GCCCATCAAC CCTGACCTTC TCAACACCAT GCGACGAGGC CGAGACTCAG GACCCCGCCA GCCACGACGA GGGCGCCCTC AGCATTCAGG TCGTCGAGGA CCACCACGTT TCGCAGTCAT CAATGAGCTT GCTGAAGCAG ACCTCCTTCC CGCGATTTAT TTCATTTTCT CTCGTGCGGG GTGTAACGCA GCAGTGGAAC AATGCCTTGC CACAGGCATT ACGCTGACCA CAGAAACCCA AGCACGCCAG ATTCGCATCA TTGTTGAATC ACGTGTCGCC TCCGTTCCAC CAGAAGACCT GTCAGTCCTT GGGTTTCACG GGTGGCTTGA TGGTCTGACC CGTGGAATCG CTGCCCACCA CGCTGGCATG CTTCCCTTGT TTAAAGAAGT GGTCGAAGAA CTCTTCTCGC GTGGTCTGAT CAAAGTTGTG TTTGCCACTG AAACACTTGC TTTAGGCATC AATATGCCTG CCCGCACCGT TGTTCTTGAA AAACTTGTGA AATGGAATGG CACCGCCCAC GTCGACATGA CGCCAGGGGA GTACACCCAA CTCACCGGGC GAGCTGGACG TCGTGGAATT GATGTGGAGG GGCACGCGGT TGTTGTTGAC CACGTGGGGC TTGACCCGAT GGCGCTTGTC CGCTTGGCAT CACGGCGCAC CTACCCGCTC CGATCAAGTT TTTCACCGAC CTACAACATG GCGGTCAACC TTGTTGACCG GTTTGGTTTC GCACAAGCTC GAGAAATCCT CGAAACGTCC TTTGCACAGT TCCAAGCCGA CCGCGGTGTT GTGGATTTGG CTCGTCAAGC CCAAGGGAAC TCGGAAGCCC TCACTGGCTA CGAGCAGGCA ATGCACTGTG ATCGTGGTGA TTTTCACGAG TACATGCTCC TTCGCGAACG GCTGACTCAA CGCGAGCGTC AAGTATCGCA ACAAGCATCA ACTGCAGCAC GGAACGATGC GATTCGCGCA CTGTCCGCCT TGCGGGTAGG AGACATTGCA GAAATTCCTT CAGGGCGATC GACCGGCTAT GTTCTGGTAT TGGATCGTGG GAAAGACACA GGATTTGAAG GACGGCGCCC ATTCGTGTTG ACCGAAGGCG GCAAAACCCG GGTCCTCACC GCCGCCGATG TTCCCCATGG CCTGACCCAT GTCGGTTCGA TGCGGCTCGA TCCCCGACTC AATACCCGGC GGCCTTCCGA TCGCAGAGCT GCCACTCAAC AGTTCCGTGA TGTCCTTCGC CACGGTGACA TGACACCGGC ACCCACACGT GAATATGGGG GCAGAAAGCG CAGGTCTGAC GCCGGTGGTG ACCGTCTTAT CGCGTCCCTA CGTCAGGAAC TGCGGGACCA CCCCTGCCAT GCTTGTCCAG ACCGTGATGA CCACGCACGA TGGGGGGAGC GCTGGTTGAC GCTCCGTCGG GAGCACGAAG GATTGCTGGC ACGCATTGAC CGAAAAACTG GGTCCATCGC CAAAGTCTTT GACAAAATCT GCCGCGTACT TGATCAGTAT GGGTATGTTG AACGCAACGG TGACCACTAT GTGGTTACTG AGCAAGGGCG AACACTTCAA CGAATTTACG CCGAAAATGA TCTCCTCATT GCCGAGTGCC TCACCCATGG GGTGTGGAAA GGACTTGACG CCGCACAGCT TGCTGGCGCA GTGTCCGCGG CCGTGTATCA AGCGCGAGGC GAGGAACATG CTGAACCCTC GATCCCCGGT GGGCCGACAG GAAAACTGGG GGGCAGCATC GAAAAAATGG CCGCCATGTG GGGAACACTG ACCGAACTTG AGGACTCACT CGGATTGGAA GAAACTGGGG ACCTCGACGC AGGACTCGTG TGGGCCATTC ACGCGTGGAC AAGAGGGCGG TCACTTGACG CAGTCCTTGA TCAATCAGAA CTCACTGCTG GGGATTTTGT GCGCTGGGCA AAACAGATCC TTGACGCACT TGACCACATC GCTCATGTTG CGCCGGATGA GGCTGTGGCT CAGACCGCCC GTCAAGCTAT TGACTCTATT CGACGCGGCG TCGTTGACTA TTCCAGCGTG TAG
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Protein sequence | MSPKRSRVRE QRKKEAQAVE QPHPEQELSP AQRYAHHQRT RAYPHLSHFA TTLDFPLDEF QHQACEHLEK GDGVLVAAPT GAGKTIVGEF AVHLALQQHR KAFYTTPIKA LSNQKFHDLQ RVHGPHNVGL LTGDATINGE APIVVMTTEV LRNMIYAQST TLDNVGYVIM DEVHYLADRF RGAVWEEVII HLDRSVQLVS LSATVSNAEE FGDWLAAVRG STAVIVSERR PVPLWQHVIT QGRSDSPGGL IDLYAHTVDP TDPGPTPPIN PDLLNTMRRG RDSGPRQPRR GRPQHSGRRG PPRFAVINEL AEADLLPAIY FIFSRAGCNA AVEQCLATGI TLTTETQARQ IRIIVESRVA SVPPEDLSVL GFHGWLDGLT RGIAAHHAGM LPLFKEVVEE LFSRGLIKVV FATETLALGI NMPARTVVLE KLVKWNGTAH VDMTPGEYTQ LTGRAGRRGI DVEGHAVVVD HVGLDPMALV RLASRRTYPL RSSFSPTYNM AVNLVDRFGF AQAREILETS FAQFQADRGV VDLARQAQGN SEALTGYEQA MHCDRGDFHE YMLLRERLTQ RERQVSQQAS TAARNDAIRA LSALRVGDIA EIPSGRSTGY VLVLDRGKDT GFEGRRPFVL TEGGKTRVLT AADVPHGLTH VGSMRLDPRL NTRRPSDRRA ATQQFRDVLR HGDMTPAPTR EYGGRKRRSD AGGDRLIASL RQELRDHPCH ACPDRDDHAR WGERWLTLRR EHEGLLARID RKTGSIAKVF DKICRVLDQY GYVERNGDHY VVTEQGRTLQ RIYAENDLLI AECLTHGVWK GLDAAQLAGA VSAAVYQARG EEHAEPSIPG GPTGKLGGSI EKMAAMWGTL TELEDSLGLE ETGDLDAGLV WAIHAWTRGR SLDAVLDQSE LTAGDFVRWA KQILDALDHI AHVAPDEAVA QTARQAIDSI RRGVVDYSSV
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