| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1187 |
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| Symbol | |
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| ID | 8380364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 1261033 |
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| End bp | 1264314 |
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| Gene Length | 3282 bp |
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| Protein Length | 1093 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645003932 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_003161146 |
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| Protein GI | 256832419 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0053605 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0613953 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGTC CTCGGTACGC GGAGTTACAT GCTCATTCCA CCTACAGTTT CCTTGATGGG
GCCTCAAGCC CGGCCGAGTT TGTTGCTGAA GCTGAACGGT TAGGGTTATC GGCGTTGGCG
TTGACGGAAC ACAACGGGTT GTACAGTGCG GTGCAGGTAG CAACTGCAGC GAAAGACACG
GGTGTGCGCA CTGTTTTTGG CGCGGAGGTG AGTGTCACGC CAGCTGATGC GCCTGAACCC
GTTGCTGGGC ATCGTGACCC GCAAGCGGAC CATCTGGTGG TGTTGGCTCG CGACCCGCGC
GGGTATCGGG CGTTATCGCA TGCATTGTCT TTGGCGCACT TGGCAGGTGG CGCCAAAGGG
CGCACCCACC ACACATACAC GTCATTGGCT GATCAGGGTG ATGACCAGTG GGTGATTCTC
GCAGGGTGTC GAAAGAGCCC GATTCTTCGC GCGCTACAGC GTCAGGGACA TGACGCAGCG
TTAGAGGTGG CCCATGACCT CGCGCAGAGG TTTGGGCGAC AAAACCTGGT CATTGATTGG
GTGCGGCGGG GGACCGCCTA CGACGATGCG TTAGGCGATG CGGTAGAGCG TGTAGCCCAA
GAGGCGAAGA TCGCGCTGAT TGCCTCCACC AACGCCCACT ATGCGCACCC TCGTGACCAC
CGGCGTGCTG AGGTGCTGTC AGCATTGGGT GCAGGAAGAA CCCTGGCAGA CAACGACCCA
TGGCGGTTAG CTTCACCCAC CGCACACCTA CGGTCAGCAC GTGACATGGT GCGCCTGCAC
GCTAGGCGCC CCCACAGTGT TGATGCCGCT GCCCGTCTTG CTGATGAGCT CGCGTTTGAC
TTCGATGTGG TTGCCCCACG GTTACCGCCC TACCCGGTTC CCGCCGGACA CGACGAATCC
ACGTGGTTGC GTCACCTGAC TGATAACAAA GCCCGCCGTG TGTATGGCAC CAGGGACACC
AACCATGCTG CGTGGCAGCA CATTGACCAT GAACTTTCCA TCATCACGAG TTTAGGATTC
GCCGGGTACT TCCTCATCGT TCACGACATC ATGGAGTTTT GTTCCACCCA CAACATTCTT
GCCCAAGGGC GAGGATCAGC GGCGAACTCC GCTGTCTGCT ACGCACTGGG CATCACCGCT
GTGGACGCTG TCCGCCACGG GTTACTGTTT GAACGGTTCC TTGCCCCAGA ACGTGATGGA
CCACCAGACA TCGACATTGA CATCGAATCG GGTCGCCGCG AAGAAGTCAT CCAACACGTG
TACACCCGGT ACGGTCGCCA TCATGCGGCC CAGGTCGCCA CAGTCATCAC CTACCGTCCC
CGTCTCGCTG TGCGTGACGC AGCCCGAGTG TTGGGGTACC CCATCGGGCA AGTCAACGCA
TGGAGCAAAA CCATTGATCG TTCCTTTCGC CCCGACACAC CCCCAGGAAC CCCAACCACA
CCAGATCACA CCTCAGACCT GCCCGCCCCC ACCACACAGC CACCCACCCC TCATGATGGA
CGCGCCGACC TCCCACCTGC CGTGCGTGAC ACCGCATCGC TTCTTCACAA CCTTCCCAGA
CATTTAGGTA TCCATTCCGG AGGAATGGTC CTGTGTGATC GCCCCGTCAC CCACGTGTGT
CCCGTGGAAT GGGGGACAAC CCCCGGTCGA ACCGTCCTGC AATGGGACAA AGAAGACTGC
GCGGATGCAG GACTCGTCAA ATTCGACCTC CTCGGCTTGG GGATGCTCAC CGCACTGCGC
ATCGCTTTTG ACCATGTTGC AGCCACCACC AACACCGCAC TGGGCCTATA CACCCTGCCC
CCAGAAGATC CCGGCGTATA CGAACTCCTC CAAGCAGCCG ACACTGTCGG TGTATTCCAA
GTCGAATCCC GCGCCCAAAT CTCCACCCTG CCCCGACTCA AACCCACCTG CTTCTACGAC
ATCGTCATTG AAGTCGCCCT CATCCGCCCC GGCCCCATCC AAGGCGGCTC CGTCCACCCC
TACCTCCGTC GCCGCCAAGG ACGCGAACCA GTGACCTACC CCCACCCCCT GCTCAAACCC
GCCCTGGAAA AAACCCTCGG CATCCCCTTA TTCCAAGAAC AACTCATGCA GATCGCCATT
GACGCCGCCG GGTTCACCCC CGCAGAATCT GACCAACTAC GACGCGCCAT GGGATCCAAA
CGCTCCACCG CCCGCATGGA AGCGCTGCGT ACCCGCCTCC TTGACGGCAT GGCCCAACGC
GGGATCCCCC CACACGCCAG CACAGAAATC TACGAACGCC TCAAAGCCTT CGCCGACTTC
GGATTCCCCG AATCCCACGC CTTCTCCTTC GCACACATCG TCTACGCCAG CGCTTACCTC
AAACGCCACC ACCCCGCAGC CTTCTACAGT GCACTCCTTG CCGCACAACC CATGGGTTTC
TACAGCCCAC AATCCCTCAT GAACGACGCC CGGCGCCACG GCCTGACCAT CCACCGCCCC
TGCATCGCCA CATCCACCAT CACCGCCCAT CCCACCCCCA ACACCCCCCA ACCACACCCA
CCACAACACA ACCCCCACAC ATTCCACACA CCCGCCTCAG CACGCTACGT GCCCCTGCCC
ACCACCCACG CCATCCAACT CGGACTGACC GACATCCACA CCATCACACC CACCATCGCA
CAACGCATCA TCACCGCCCG CACCACCACC GCTTTCACCG ACATCAACGA CCTTGCCTAC
CGTGCCGAAC TCACCACCAC TCAACTCGAA GCCCTCGCCG CCGCGGGAGC CCTACGCACC
CTGGGAATCA CACCCAGACA AGGCATCTGG GCTGCCGCAA CTGCCAGCAA AAATACCCCC
CACACCCTGC CCGGCCTCAC CCCCCACCAC ATACCAGCCC TGCCCCCCAT GACCGCCCAC
GACACCGCCC ACGCCGACTA CTGGTCCACC CGCATCACCC CCAACACCTA CCCCACCCAA
CTCATCCGCC CCCACCTCAC CGCACAAGGC ATCCTCACCG CCCATCAAGT CAACACCCAC
GAACCCAACA GACGCGTCAC CACCGCTGGC ATCGTCACTC ACCGCCAACG CCCCCCAACA
GCCCACGGCA TCACCTTCCT CTCCCTTGAA GACGAAACCG GCATCATCAA CGTCATCTGC
CCCATCACCA TCTGGAACAG ACACCGCACC ACCGTACGCA CTGCCCAAGC CCTCATTGTT
CGCGGTAGAG TAGAGCACGC AGATGGGGCA ACCAATCTCC TCGCAGAACA CATCTCACCC
CTCAACCTAG GAGTGGCCAG CACCTCACGA GACTTCCGCT GA
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| Protein sequence | MSSPRYAELH AHSTYSFLDG ASSPAEFVAE AERLGLSALA LTEHNGLYSA VQVATAAKDT
GVRTVFGAEV SVTPADAPEP VAGHRDPQAD HLVVLARDPR GYRALSHALS LAHLAGGAKG
RTHHTYTSLA DQGDDQWVIL AGCRKSPILR ALQRQGHDAA LEVAHDLAQR FGRQNLVIDW
VRRGTAYDDA LGDAVERVAQ EAKIALIAST NAHYAHPRDH RRAEVLSALG AGRTLADNDP
WRLASPTAHL RSARDMVRLH ARRPHSVDAA ARLADELAFD FDVVAPRLPP YPVPAGHDES
TWLRHLTDNK ARRVYGTRDT NHAAWQHIDH ELSIITSLGF AGYFLIVHDI MEFCSTHNIL
AQGRGSAANS AVCYALGITA VDAVRHGLLF ERFLAPERDG PPDIDIDIES GRREEVIQHV
YTRYGRHHAA QVATVITYRP RLAVRDAARV LGYPIGQVNA WSKTIDRSFR PDTPPGTPTT
PDHTSDLPAP TTQPPTPHDG RADLPPAVRD TASLLHNLPR HLGIHSGGMV LCDRPVTHVC
PVEWGTTPGR TVLQWDKEDC ADAGLVKFDL LGLGMLTALR IAFDHVAATT NTALGLYTLP
PEDPGVYELL QAADTVGVFQ VESRAQISTL PRLKPTCFYD IVIEVALIRP GPIQGGSVHP
YLRRRQGREP VTYPHPLLKP ALEKTLGIPL FQEQLMQIAI DAAGFTPAES DQLRRAMGSK
RSTARMEALR TRLLDGMAQR GIPPHASTEI YERLKAFADF GFPESHAFSF AHIVYASAYL
KRHHPAAFYS ALLAAQPMGF YSPQSLMNDA RRHGLTIHRP CIATSTITAH PTPNTPQPHP
PQHNPHTFHT PASARYVPLP TTHAIQLGLT DIHTITPTIA QRIITARTTT AFTDINDLAY
RAELTTTQLE ALAAAGALRT LGITPRQGIW AAATASKNTP HTLPGLTPHH IPALPPMTAH
DTAHADYWST RITPNTYPTQ LIRPHLTAQG ILTAHQVNTH EPNRRVTTAG IVTHRQRPPT
AHGITFLSLE DETGIINVIC PITIWNRHRT TVRTAQALIV RGRVEHADGA TNLLAEHISP
LNLGVASTSR DFR
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