| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1086 |
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| Symbol | dnaE |
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| ID | 8380263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 1156423 |
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| End bp | 1159968 |
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| Gene Length | 3546 bp |
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| Protein Length | 1181 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 645003827 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_003161045 |
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| Protein GI | 256832318 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.594461 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTCCT CGAACGCGGA TTTTGTGCAT CTTCATGTCC ACACCGAATA CTCCATGCTT
GATGGGGCAG CGCGGCTGGA TGACTTGTTC CAAGAGACAG CACGACTTGG GCAGCACACG
ATTGCGACAA CGGACCACGG GTACATTTTT GGGGCCTACG AGTTCTGGTC CAAAGCCCGT
GCAGCAGGTG TCAAGCCCAT CATCGGAGTA GAAGCGTATT TGACACCCGG GACAAGCCGC
TTTGACCAAA CACGCCGCCT GTGGGGAGAG CAGTCACAGC GAGAAGACGA CGTGTCAGCA
CGTGGTGCCT ATACTCACTT CACCTTGTGG GCACGGAACA ATGAGGGTCT TCACAATCTC
TTTCGAATGA GTTCTTTGGC TTCGCTTGAA GGACAAATGG GGAAGTGGCC GCGAATGGAT
CGCGAACTGC TCCAAACATA TTCTGAGGGT TTAATTGCCT CTAGCGGTTG TCCTTCGAGC
GAAGTGCAAA CTCGGCTACG ACTTGGCCAG TTTGACGAAG CTCTCCGCGC CGCAGGGGAG
ATGCAAGAGA TCTTTGGTAA AGAGAATTTC TACGTTGAAC TGATGGATCA CGGGCTATCT
ATCGAGAATC GCGTTCGCTC TGAACTGCTT GAGGTGGCTC GTAAGATTAA CGCTCCGCTC
GTGGCAACAA ATGATTCTCA CTATGTGCGT AGAGATGATG CTGCGTCACA AGAGGCACTG
CTGTGCATTA ACTCGGGATC AACGCTTCTT GATCCTGACC GTTTTAAGTT TGATGGAGAC
GGGTATTACA TCAAGTCGGC GCAAGAGATG CGTGATTTGT GGCGTGATAT CCCGGAAGCG
TGTGACAACA CGTTGCTCAT CGCTGAGCAG TGTGATGTGT CATTCAATAC CTCAGCCAAC
TACATGCCGA AGTTTCCATG CCCGCCGGGT GAAGACGAAA CATCGTGGTT CATCAAAGAG
GTGGAACGTG GGTTGCATGC GCGTTACCCG CAAGGGATCC CCGATGATGT CCGTGCGCAG
GCCAAGTTCG AGATCAATGT CATCACACAG ATGGGGTTCC CCGGGTACTT CCTTGTTGTG
GCTGACTTCA TTAACTGGGC GAAGAACAAC GGTATTCGGG TGGGGCCAGG GCGTGGTTCA
GGTGCTGGAT CGATGGCAGC ATACGCCATG CGGATCACGG ACCTAGATCC GCTGAAACAT
GGGCTCATCT TTGAGCGCTT TTTGAACCCA GACCGGGTGT CCATGCCGGA CTTCGATGTT
GACTTTGACG AGCGCCGCCG TGGGGAAGTG ATTCGTTACG TCTCGGAAAA ATATGGCGAG
GACCGTGTTG CGCAGATCGT GACGTATGGA ACGATTAAAG CGAAACAAGC ATTGAAGGAT
TCGTCGCGAC TGCTTGGTTT TCCCTTCGCG ATGGGTGAGA AGCTAACAAA GGCGATGCCT
CCAGCGATCA TGGGGAAAGA TATTTCTTTG ACAGGGATAT TTGACCCACA AGACAAGAGG
TACCACGAAG CCGAGGAATT CCGTCAACTT CATGCGGGAG ATCCTGATGC GCAGCGTGTT
GTGGAACTCG CAAAAGGCAT TGAAGGGCTG AAGCGGCAGT GGGGCGTGCA TGCTGCTGGT
GTCATCATGT CCTCAGATCC ACTGATCGAC ATCATCCCCA TCATGCGTAG ACCACAAGAT
GGTGCAGTGA TCACTCAGTT TGATTACCCA ACGTGTGAAA CTCTTGGGTT GATCAAGATG
GATTTCCTCG GATTGAGGAA CCTTACGATT CTCGATGATG CACTGGATAA TATTGTCCAA
AACAACAAAG AGCCAGTCAT TCTTGAGGAT CTTTTGCTGG ATGACCGCAA AACATATGAA
CTTCTTGCAC GGGGGGAGAC CCTTGGTGTG TTCCAGCTTG ATGGCAATGG TATGCGTTCG
CTTCTGCGCC TCATGCGCCC GGATAACTTT GAGGACATTT CGGCTGTTGG TGCGTTGTAC
CGCCCCGGCC CTATGGGTGC GAATTCGCAC ACGAATTATG CGCTGCGTAA GAATGGCCAG
CAAGCGGTCA CTCCTATCCA TCCTGAGCTC GAGGAGCCCC TCGCTGAGAT TCTTGGGAAT
ACCTATGGTC TTATTGTTTA TCAAGAGCAG GTGATGGCAA TTGCGCAGAA ACTTGCGGGG
TACTCACTGG GCCAGGCAGA CATTCTTCGC CGCGCAATGG GGAAGAAGAA GAAATCTGAA
CTTGACAAGC AATTTGAGAT GTTTTCTCAG GGGATGATAG ACCGCGGCTA TTCTATGCAG
GCAGTAAAAA CGCTGTGGGA TATTCTTGTT CCGTTTTCGG ATTACGCGTT CAACAAAGCT
CACTCGGCCG CCTATGGTGT GGTGTCCTAT TGGACGGCAT ACCTGAAGGC GAACTATCCC
ACAGAGTATA TGGCGGCTTT GTTGACTTCT GTGAAAGACG ACAAGGATAA GTCAGCGCTG
TACCTCAACG AGTGCCGGCG TATGGGGATC ACAGTTCTCC CGCCGGATGT GAACTCGTCG
TTAGCGAACT TTGCTGCTGT TGATCGGGAC ATACGTTTTG GGTTGACTGC CGTGAGGAAC
GTGGGGGGAA ATGTTGTTGA TGCCATTATT GCGACACGTG AAGATAAGGG AGAGTTCAGC
TCGTTCACGG ATTTCCTCGA TAAGGTTCCT GCTGTTGTGT GCAACAAACG CACGATTGAA
TCCCTGATCA AGGCTGGCGC TTTCGATTCC CTTGGTCATC CACGGAAGGC GCTTCACATC
ATCCACGAAC AGGCAGTGGA TTCGGTTATT TCGGTGAAAC GCAAAGAGGC TGAGGGGCAG
TTTGATTTAT TTGCAGAATT TGGTAGTGAA CCTGAAGAGG GGATGTCCTT TTCCGTTGAT
GTTCCTATGC TTGATGACTG GGATAAAAAG CAGCTTCTCG CTTTTGAGCG TGAAATGCTT
GGTTTATATG TCTCGGATCA CCCTTTGTCA GGGATCGAAC ATGTTCTCAC CCAAGCGTCG
GATCTTGCCA TCGCCAAACT GTTGGCTGAT GAAGGGCGCC CCGATGGGTC AACTGTGACA
ATCGCGGGTC TGGTCACAAC TGTGCAACGG AAGATGTCGA AGCAAGGTAA CCCTTGGGCG
TCGGCCACAG TTGAGGATCT TGATGGGTCC ATCGACGTGA TGTTCTTTGG GGAAGCGTAT
CTCGCTTACT CAGCTGTGTT AGCAGAAGAC CAGGTCGTTG TGGTCAAGGG ACGGATTCGC
CGACGTGATG ATTCCATGTC GCTGCAAGCG ATGGAAGTGA CGTTGCCTGA TCTTTCGGTG
AGTGATGAAG CGCCCTTGTT CGTCACGATT GCTGCCTCTC GATGTACTGA GCCGATTGTC
GAGAAAATCG CAGAGATTTT GGGGACTCAT CCCGGGAAGT CTGAGGTGCG TATCCGGGTG
ACGATGCCTG GACGCACCAC TGTGGTGCGC TTGGCTGACG AATTTCGGGT CGAACGTAAT
CCTGCGTTGT CTGCGGAGTT GAAGGCTCTT TTGGGGGCAG CGAGCTTGAC GCAAGGAGGA
GTGTAA
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| Protein sequence | MASSNADFVH LHVHTEYSML DGAARLDDLF QETARLGQHT IATTDHGYIF GAYEFWSKAR
AAGVKPIIGV EAYLTPGTSR FDQTRRLWGE QSQREDDVSA RGAYTHFTLW ARNNEGLHNL
FRMSSLASLE GQMGKWPRMD RELLQTYSEG LIASSGCPSS EVQTRLRLGQ FDEALRAAGE
MQEIFGKENF YVELMDHGLS IENRVRSELL EVARKINAPL VATNDSHYVR RDDAASQEAL
LCINSGSTLL DPDRFKFDGD GYYIKSAQEM RDLWRDIPEA CDNTLLIAEQ CDVSFNTSAN
YMPKFPCPPG EDETSWFIKE VERGLHARYP QGIPDDVRAQ AKFEINVITQ MGFPGYFLVV
ADFINWAKNN GIRVGPGRGS GAGSMAAYAM RITDLDPLKH GLIFERFLNP DRVSMPDFDV
DFDERRRGEV IRYVSEKYGE DRVAQIVTYG TIKAKQALKD SSRLLGFPFA MGEKLTKAMP
PAIMGKDISL TGIFDPQDKR YHEAEEFRQL HAGDPDAQRV VELAKGIEGL KRQWGVHAAG
VIMSSDPLID IIPIMRRPQD GAVITQFDYP TCETLGLIKM DFLGLRNLTI LDDALDNIVQ
NNKEPVILED LLLDDRKTYE LLARGETLGV FQLDGNGMRS LLRLMRPDNF EDISAVGALY
RPGPMGANSH TNYALRKNGQ QAVTPIHPEL EEPLAEILGN TYGLIVYQEQ VMAIAQKLAG
YSLGQADILR RAMGKKKKSE LDKQFEMFSQ GMIDRGYSMQ AVKTLWDILV PFSDYAFNKA
HSAAYGVVSY WTAYLKANYP TEYMAALLTS VKDDKDKSAL YLNECRRMGI TVLPPDVNSS
LANFAAVDRD IRFGLTAVRN VGGNVVDAII ATREDKGEFS SFTDFLDKVP AVVCNKRTIE
SLIKAGAFDS LGHPRKALHI IHEQAVDSVI SVKRKEAEGQ FDLFAEFGSE PEEGMSFSVD
VPMLDDWDKK QLLAFEREML GLYVSDHPLS GIEHVLTQAS DLAIAKLLAD EGRPDGSTVT
IAGLVTTVQR KMSKQGNPWA SATVEDLDGS IDVMFFGEAY LAYSAVLAED QVVVVKGRIR
RRDDSMSLQA MEVTLPDLSV SDEAPLFVTI AASRCTEPIV EKIAEILGTH PGKSEVRIRV
TMPGRTTVVR LADEFRVERN PALSAELKAL LGAASLTQGG V
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