| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1070 |
|---|
| Symbol | |
|---|
| ID | 8380247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 1140651 |
|---|
| End bp | 1142180 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645003811 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate/D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_003161029 |
|---|
| Protein GI | 256832302 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTCG TCATGCTCGT CGAGCTCTTA CGCGCTGGAG TAATCAGCAT CACTAGTGCG
CCTCGGTGCG GCTGCAGCCG CACCGAAGTC ACGAATCCCA ATGAGCCTAT GGCAGTAAGG
ACGTATAGCA ACGTGTTCAC AGCGCAGGAG ATCGCTTCCA TCACCGGCGG TGAGTTATCT
TGTCCGTCAG ATGTCACAGT GACAGGACAG GTCACGATCG ATTCGCGAAC AGTGTCGACT
GGGGACTTAT TTGTTGCCGT GGTCGGGGAA CGCTCTGACG GCCACGACTA TGCTTGCGTG
GCCCACTCGC AAGGTGCAGT GCTCGTGCTC TCCCAGAAAA ACATCAAGGG GGTTCCCTGT
GTGGTTGTCG CTGACACCCA ACGCGCCCTC GGTGATCTGG CACGAGCACA CCTTGCCAGA
CTGCGGGAGA AGGGGCATAT CCGCGTCATC GGAGTAACCG GATCTGCGGG AAAAACCACA
ACAAAAGATC TTATGGGGCA GATGCTCGCA ACTTATGGGA ACGTTGTGGT TCCCGCTGGG
TCACTCAACA ATGAACTGGG CTTGCCACTG ACAGTACTGA AAGCGGACGA AACAACGGAT
TTCCTCGTCA CAGAAATGGG CGCATCGGCA GTTGGGGATC TTCACTACCT CACATCTATC
GCCCCCCTCG ATATTGCAGT GGTGTTGATC GTTGGCCTCG CACACCTTGG TGGCTTCGGA
TCTGCGGAAC TGGTCGCACA AGCGAAAAGC GAACTTGTCA CAGGTCTCCT CCCGCAAGGA
ATCGCAGTTC TCAACGCAGA TGACCACCGA GTCATCGCGA TGAAGGAGCT TGCACACGGC
CAAGTACGCA CCTTCGGGTC GGTCCGTGGA GCAGATATGC GAGCCATCAA TGCCCGCACA
GACGCCGCAG GGCGCGCCCA CTTTGACGTC GAAACAACAG CAGGGGACAC AGCGTCGGTG
ACTTTGACTC TTGTGGGCGA ACATCATGTC ACCAACGCGC TCGCGGCACT GACAGCAGTG
ACCGCACTGG GAATGCCACT TGACCAAGCT GCTGTTGCTC TGAGTGCTGC ACGAGCAACC
AGTCCGCACC GTATGGATGT TGTGGACCGT CCAGATGGTG TCACCATTAT TGACGACTCC
TACAACGCCA ACCCAGATTC CATGCGTGCC GCTCTGCGAG CTTTGGCCAC TGTTGCTGGC
CGTCAACGCC GGACTGTGGC AGTGCTCGGG GAAATGCGTG AGCTTGGCCC CCAATCACGT
ACCTACCACG ATGACATCGG GCGCCTAGTC GTGCGGCTCA ATATCTCGCG GCTTATTGTC
GTAGGACAGG GAGCGCAGGG AATTGCTGAC GGCGCCCTGC AAGAAGGGTC GTGGGGAGAC
GAGGTCGTGG AAGTCGCTGA CCTCAATGCA GCGCATGCTG CCCTCAACGA CTACCTTCAG
CCTAACGATG TGGTGTTAAT CAAAGCGTCT CACGGTTCTG GCCTGTGGCA ACTCGCCGAT
GAACTGACTG GAAAGGCAGC AAACTCGTGA
|
|---|
| Protein sequence | MIVVMLVELL RAGVISITSA PRCGCSRTEV TNPNEPMAVR TYSNVFTAQE IASITGGELS
CPSDVTVTGQ VTIDSRTVST GDLFVAVVGE RSDGHDYACV AHSQGAVLVL SQKNIKGVPC
VVVADTQRAL GDLARAHLAR LREKGHIRVI GVTGSAGKTT TKDLMGQMLA TYGNVVVPAG
SLNNELGLPL TVLKADETTD FLVTEMGASA VGDLHYLTSI APLDIAVVLI VGLAHLGGFG
SAELVAQAKS ELVTGLLPQG IAVLNADDHR VIAMKELAHG QVRTFGSVRG ADMRAINART
DAAGRAHFDV ETTAGDTASV TLTLVGEHHV TNALAALTAV TALGMPLDQA AVALSAARAT
SPHRMDVVDR PDGVTIIDDS YNANPDSMRA ALRALATVAG RQRRTVAVLG EMRELGPQSR
TYHDDIGRLV VRLNISRLIV VGQGAQGIAD GALQEGSWGD EVVEVADLNA AHAALNDYLQ
PNDVVLIKAS HGSGLWQLAD ELTGKAANS
|
|---|
| |