| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1039 |
|---|
| Symbol | |
|---|
| ID | 8380216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 1103598 |
|---|
| End bp | 1108454 |
|---|
| Gene Length | 4857 bp |
|---|
| Protein Length | 1618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645003780 |
|---|
| Product | DEAD/H associated domain protein |
|---|
| Protein accession | YP_003160998 |
|---|
| Protein GI | 256832271 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAC TGTTTAGCAC ACCAACGGTC GAATGGTTTA CCGGCGCTTT TGATGAACCG
ACAGCGGCAC AATGGGGCGC TTGGGACGCA ATCGCCCGCG ATCATCATGC AGTTGTGGTT
GCACCCACTG GTTCAGGTAA AACATTGGCT GCGTTCTTGT GGGCGATTGA CAAGATCTCC
GCTCGCACCC AGGCCCCATC TTCCCCGCTC AATCGTTGCT CGGTGCTCTA TGTTTCGCCT
CTCAAAGCCC TCGCAACAGA CGTCGAGCGT AACCTGCGCG CTCCCCTTCG CGGAATTGAA
CAGGCTATTG CGCGTACTGG CGGCACGCCT TACACGATGC AGGTGGGAGT ACGCACCGGG
GACACACCGC CATCAGAACG GCGACGTTTT GGCACACATC CACCCGATAT TTTGATCACT
ACACCCGAGT CTCTATTCCT GATGTTGACG TCCCAAGCTC GCTCTGGACT GAGCGGAATT
GACACCGTCA TCATTGACGA AGTGCATTCT GTTGCCGGAA CAAAGCGCGG GGCACACTTG
TCGGTGTCGT TGGAACGCCT CGATGCGTTT CTTGAACGCC CCGCCCGGCG TATTGGTTTG
TCGGCGACGG TCGAGCCCGT AGATGCCGTG TCCGACTGGC TCGCAGGTGG GCGGTCGATC
TCAGACGGTG GCCGACCCGT CACGGTGGTT GCGCCACCTG TGTCCAAGAA GTTCGACATT
TCCGTGGAGG TGCCTCTTGA GGACCTGAAT GATCCCCAAC AGACGGGAGA ATTTGATGTG
TCGCTGTCCG GGGACGCGGC GCAAGAACCT CGAGCACGGG CATCGGTGTG GCCACATGTC
GAAGAGCGAA TCGTTGACCT CGTTCAGCAA CACACCACAA CACTGGTGTT CACTAATGCG
CGTCGCGGTG CGGAACGGCT CACTGCGCGG ATGAATGAGA TAGCAGCTCG GCGTTCGGGG
CAGGATGTCC CGGATGCAGG GTCGATGCAT GCGGCTGCAA TCCAAGCGCA GTCAGGGGCA
GCTTTGGATG TCGATCATGT CATCGCTCGT GCGCACCACG GGTCGATGAG CCGCAGCGAA
CGGTCAAGGA CTGAGAGTGA TCTCAAAAAT GGAGTGCTGC CGTGCGTGGT GGCGACCTCG
TCGTTGGAGT TGGGGATTGA CATGGGGTCG ATCGATCTGG TTGTCCAGGT TGGTCCTCCC
CCGTCGGCAG CTTCTGGGTT GCAGCGTGTG GGTCGGGCGG GGCACAGTGT GGGCGCAGTG
TCGCGTGGAC GCATTTTCCC GGTGCATCGT GGGGAGTTGG TTCCGGCTGC GATTATTGCG
CAACGGATGC GGACGCGGAC GTTGGAGCCT CTTCATCGGG TAGCTAATCC TCTGGATGTC
CTTGCCCAGC AGATCGTGGC GATGCTTGCC GTTGATGACT GGGACAAGGA TGAGTTGTTC
ACAACAATTC GTAGGTCAGC CCCTTTTATG GGGTTGGGTC ATGCGACGTT TGTGGCTGTG
CTCGACATGC TGGCTGGGCG CTACCCGTCT GAGGATTTTG GTGAGTTACG GGCGAGGATC
GTGTGGGATC GGGCGACAAA CCTGTTGACA GGGCGTCCTG GTGCCTTGCG CTTAGCTGCG
ACGTCGGGGG GAACTATTCC TGATCGAGGG CTTTATGGGG TCTTTCTCGT CGATTCCGCA
GCGGTGTCTG ATGGTGTGGT TGATACGTCT GTGGACGATG CGCCAGGCGT TCCGCGCGCT
GGGAAGGTCA GGCTGGTGGG CGGTAAGCGG GTAGGCGAGC TTGACGAGGA AATGGTGTAC
GAATCGCGGG TGGGTGACGT GTTCACGTTG GGCTCGTCGA CGTGGCGAAT TGAGGAGATC
ACACCTGACC GCGTTTTGGT GTCTCCGGCG CCTGGTGTGC CTGGGCGGCT CCCTTTTTGG
AAGGGCGATG GTCTGGGTCG TTCTTTCTCG TTAGGGGTAG CGATCGGGCA GTGGTTACGG
CGCGGCCGCC ATGACGACGA CGATGCGGTG TGGGCTGGTC TTGATGAGCG TGCGGCATCG
AACTTGCGCT CATATCTTCG TGAGCAGGAA GAAGCCACGG GCGTTTTGCC CACTGATGAC
ACGATCGTCG TGGAACGTTT CCGCGATGAG CTCGGCGATT GGCGAGTGGT CATCCATACG
CCTTTTGGCG CGCGAGTTCA TGCGCCGTGG GCTTTGGTGA TTGGAGCCCG GTTGCGTGAG
CGTTATGGGT TTGATACGGC AACGATGCAC TCCGATGACG GGATTGTTAT TCGTCTTCCT
GCTGCGGATG ATCCCTATGA TGTGGCCGGG GCTGTGAGTG ATGGGGCGTC AGAGAACGCT
GGTGGTGTGG GCTTTGATGA CCTGATGGTG GCTGGCGATG CGGTGGAGTC GTTGGTGCGG
GAACACGTTG CGGATTCGTC GTTGTTTGCT GCCCGTTTTC GTGAAGCTGC TGGGCGGGCA
TTGTTGTTGC CTCGGGCTCG CCCAGACCGG CGTCAGCCGT TGTGGCAGCA GCGTCAACGC
TCAGCTCAGT TGTTGTCAGT CGCGGCGCAG TTCCCTGATT TTCCTATTGT GTTGGAAGCT
GTTCGTGAGT GTCTTCAAGA TGATTATGAT GTTCCTGCTT TGCGTTCTGT GATGGAACGT
GTTGAGGAGG GGACGCTGCG TGTGGTGGAG GTGACGACTC CACGTGCGTC ACCGTTTGCT
CAGACCCTGC TTTTTGGGTA CACGGCTCAG TTCATTTATG ACTCGGATGC GCCTTTGGCG
GAGCGGCGCG CAGCTGCGCT CACCCTGGAT CCAACGCTAT TGGCTGAGTT GTTGGGGGCT
AGTGGTTCCG GTGATTTAGC GGATCTGCTT GATGAGGGTG TGGTGGAGAA GACCGCGTTG
GAGCTCGCTG GTGTGGGTGA TCGACGGCTC CGTCATGCGG AAGATGTGTG GGATTTTCTG
CAGCGTTGGG GCCCTATTAC GGTGGAGGGT TTGGGTGCTC GCTGGGTGGG TATTGATCGT
GATGACCTGG TCCAGGTTGA CCCCCATCAT CTCAACCGTT CTGTTGATGC ACTCTCATGT
CCTGATCCGC GCGGAGTTGA TTGGGCACGT GATGTCGTGG CGGAGCTTGT GCAGTCGCGT
CGTGTTTTTC CGGTGCGGTT GATGACACGT TCTGGGCCAC GTGAGTATGT GGCATCGATC
GTTGATGCGG GTCGGTTGCG GGACGCGTTG GGGGTCGCTA TTCCACCGGG TATCGCTGAT
GAGTGGTCAG CCCCGGTGCG TGACCCGCTG GGTGATATGG TGCGCCGTTA CGCCAAAACT
CACGTTCCTT TCACGGTCGA TGATGTGGCG GAACGGTTTG GTGTGGGCCG AGCAGTGGTC
TTTGACGTGG TGCGGCGTTT GGTGGCGTCG GGTGTTGTTG TTGCTGGCCG ATTGTTGCCC
AGCACCTTTG GGGGCGTGGG CGACGAGTAC TGTGATGCCG ATGTGATGCG TGTACTGCGG
CGCAGATCGC TGGCGGCGTT GCGTGCTGAT GTGGAACCTG TGGTGCCCTC AACGTTGGCT
GTGTTTCTCC CTCAGTGGCA CCGGTTGGGT GAGTTGCGTG GGGTTGATGG GACTGCGACT
GCTCTTGAGC AGTTGGTTGG GGCTCCCATT CCGGTGTCTA CGTTGGAGGC TGATATTTTG
CCGGCACGGG TCGTGGGTTA TCGACCTGAG TTTCTTGATG AGTTGATGGT CGGCGGTGAA
GTGATGTGGG TGGGACACCG ATCCTTATCT GGGTTACGTG GTGGACGTGA TGGAATCGTG
TCGTTCCATG ACCCGTTGTC GGCTCACCTC ACGCTTCCTG CTGTTCCGCC CCTGCAGAAC
AATGACGATT TCGTTGTTGA GTCTATTCAT CGAGATGTGT GGGAGGTGTT GGAGAACTCT
GGTGGTTTTT TTGCCCATCA GCTTGCTGCT CAACTTGGTT GTTCGTTCAC GGTGCTTGGC
GATGCGTTGT GGGATTTGGT GTGGGCTGGG TACGTGACGA ACGATTCATT CGCGCCCTTA
CGTGCGTTGC TCGGTCGTCA GCGTGCTGCA CCCCGGTCGC GGTCCACGGC GAGTCGTCGT
CCCCGGCGCC TTGGGTCGCG TTTTGGGCAG TTGGCGTCTG TGAACTCAGA TCGGCTGAGT
GAACACCCAA CTCTTGTGGG ACGTTGGTCC GCGGTGGCGC GCCCCTTCGT AGGGCGCGAA
GAGAGTTTGG CCGCCTGGAC TACTGTGTTG TTGGATCGGT ACGGCGTCAT CACCCGTTCA
GTCCTGGGCT CAGAGGATAG TGGGTTCCGT TTTACTGAGC TGTACCGGGC CTTGTCTCAC
CTTGAAACGA CGGGCGCTCT TCGCCGTGGG TACTTTGTTG AGCACCTGGG AGGTTCGCAG
TTTGCTGCTC CTTTAGCGGT GGATGCTTTG CGTGTGGCGG ACACTGCACG TTCTGGGGGT
GGGCCCTTGC CGGGTGAAAC ACGGTTATTG TCAGTGTGGG ATCCTGCCCA ACCCTATGGG
AGCACACTTG CGTGGCCTGA CTCGTTCTCA GTGGCGCGTC CAACTCGGCG GGCTGGTGCG
CATGTGGTTA TTCATCGTGG TGAGTGCGTC TGCTATGTCG ATCACACAGG CCGTTCGGTC
GTGTTTGCGC CATTGCCACG TCCCACTCTT GACCGTGTGT GCACTGTTCT TCGCGAGGCA
GTCGATGATG GCAGGGTCTC CCCCATGAAA GTGTCAAAAA TCAACGGCAT GGAGGTTCTT
GCCCTTGTCA GATCACATGA GCACCCGGAT ATTGTTGACG CACTGACACA GGCGGGGTGG
ACACTCACAC CCTCTGGGTT GTCCTATCGC GGAAGGAACT CGCATGCCCG AAGGTGA
|
|---|
| Protein sequence | MSALFSTPTV EWFTGAFDEP TAAQWGAWDA IARDHHAVVV APTGSGKTLA AFLWAIDKIS
ARTQAPSSPL NRCSVLYVSP LKALATDVER NLRAPLRGIE QAIARTGGTP YTMQVGVRTG
DTPPSERRRF GTHPPDILIT TPESLFLMLT SQARSGLSGI DTVIIDEVHS VAGTKRGAHL
SVSLERLDAF LERPARRIGL SATVEPVDAV SDWLAGGRSI SDGGRPVTVV APPVSKKFDI
SVEVPLEDLN DPQQTGEFDV SLSGDAAQEP RARASVWPHV EERIVDLVQQ HTTTLVFTNA
RRGAERLTAR MNEIAARRSG QDVPDAGSMH AAAIQAQSGA ALDVDHVIAR AHHGSMSRSE
RSRTESDLKN GVLPCVVATS SLELGIDMGS IDLVVQVGPP PSAASGLQRV GRAGHSVGAV
SRGRIFPVHR GELVPAAIIA QRMRTRTLEP LHRVANPLDV LAQQIVAMLA VDDWDKDELF
TTIRRSAPFM GLGHATFVAV LDMLAGRYPS EDFGELRARI VWDRATNLLT GRPGALRLAA
TSGGTIPDRG LYGVFLVDSA AVSDGVVDTS VDDAPGVPRA GKVRLVGGKR VGELDEEMVY
ESRVGDVFTL GSSTWRIEEI TPDRVLVSPA PGVPGRLPFW KGDGLGRSFS LGVAIGQWLR
RGRHDDDDAV WAGLDERAAS NLRSYLREQE EATGVLPTDD TIVVERFRDE LGDWRVVIHT
PFGARVHAPW ALVIGARLRE RYGFDTATMH SDDGIVIRLP AADDPYDVAG AVSDGASENA
GGVGFDDLMV AGDAVESLVR EHVADSSLFA ARFREAAGRA LLLPRARPDR RQPLWQQRQR
SAQLLSVAAQ FPDFPIVLEA VRECLQDDYD VPALRSVMER VEEGTLRVVE VTTPRASPFA
QTLLFGYTAQ FIYDSDAPLA ERRAAALTLD PTLLAELLGA SGSGDLADLL DEGVVEKTAL
ELAGVGDRRL RHAEDVWDFL QRWGPITVEG LGARWVGIDR DDLVQVDPHH LNRSVDALSC
PDPRGVDWAR DVVAELVQSR RVFPVRLMTR SGPREYVASI VDAGRLRDAL GVAIPPGIAD
EWSAPVRDPL GDMVRRYAKT HVPFTVDDVA ERFGVGRAVV FDVVRRLVAS GVVVAGRLLP
STFGGVGDEY CDADVMRVLR RRSLAALRAD VEPVVPSTLA VFLPQWHRLG ELRGVDGTAT
ALEQLVGAPI PVSTLEADIL PARVVGYRPE FLDELMVGGE VMWVGHRSLS GLRGGRDGIV
SFHDPLSAHL TLPAVPPLQN NDDFVVESIH RDVWEVLENS GGFFAHQLAA QLGCSFTVLG
DALWDLVWAG YVTNDSFAPL RALLGRQRAA PRSRSTASRR PRRLGSRFGQ LASVNSDRLS
EHPTLVGRWS AVARPFVGRE ESLAAWTTVL LDRYGVITRS VLGSEDSGFR FTELYRALSH
LETTGALRRG YFVEHLGGSQ FAAPLAVDAL RVADTARSGG GPLPGETRLL SVWDPAQPYG
STLAWPDSFS VARPTRRAGA HVVIHRGECV CYVDHTGRSV VFAPLPRPTL DRVCTVLREA
VDDGRVSPMK VSKINGMEVL ALVRSHEHPD IVDALTQAGW TLTPSGLSYR GRNSHARR
|
|---|
| |