| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_1025 |
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| Symbol | |
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| ID | 8380202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 1088539 |
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| End bp | 1090746 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645003766 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_003160984 |
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| Protein GI | 256832257 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR02696] guanosine pentaphosphate synthetase I/polynucleotide phosphorylase
[TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGGCC CAGAAATTCA GTTCGCCGAA GCCGTCATCG ACAATGGTCG TTTTGGTACA
CGCACCGTCC GCTTTGAAAC TGGTCGTCTT GCACGCCAGG CAGCAGGAAG CGCGTGCGCA
TACCTCGACG GTGACACCAT GCTTCTTTCA ACGACTGCCG TGGGGAAACA CCCCAAAGAT
CAGTTTGATT TCTTCCCCCT CACCGTCGAT GTTGAAGAGC GCATGTACGC CGCGGGGCGG
ATCCCCGGCT CGTTCTTCCG CCGTGAAGGA CGCCCCTCCA CTGAAGCGAT CCTTGCGTGC
CGTCTGATTG ACCGCCCGCT GCGTCCAAGC TTTGTCAAGG GGCTTCGTAA CGAGGTGCAG
GTTGTCATCA CTGTCTTGTC GATCCACCCT GATGAGGCAT ATGACGTTCT TGCTATCAAC
GCAGCATCGA TGTCGACTCA ACTATCTGGT CTGCCCTACT CAGGTCCAGT TGGTGGAGTA
CGTGTTGCGC TCATTGATGA CCAATGGGTT GCGTTCCCGA AGCACTCGGA CAAAGAACGT
GCCGTGTTTG ACATGGTTGT TTCTGGTCGC ATTGTTGGAG ACGACGTTGC GATCATGATG
GTGGAAGCTG AAGCCACCGA AAACTCGTGG AACCTTGTGA AGAACCAAGG TGCGACAGCC
CCGACTGAGG GTGTCGTGGC AGAAGGACTT GAAGCAGCGA AACCATTCAT CCGCGCTTTG
TGTGAGGCAC AAATCGAGCT GGCTGCGAAG TCTGCGAAGC CTCAAATGGA GTTCCCGCTC
TTCTTGGACT ACCAGGACGA CGTCTACGAA GCTGTTAAGA ACGCTGCGAC AGATGACTTG
CGCACTGCGT TAACGATCGC CGACAAGCAG GAACGCGAAA ATCGACAAGA CGAGATCAAG
GACGCAACTC TAGCCTCGTT GGCTGAGCAG TTCGAGGGAC GTGACAAAGA GATCAGCGCA
GCGATCCGCT CGTTGACCAA GTCCCTTGTA CGCCAGCGCG TCTTGACTGA CGGTGTGCGT
ATCGATGGCC GTGGACTTGC GGACATCCGT ACGCTCAGCG CTGAGGTTGA GGTTGTCCCG
CGCGTTCACG GTTCGGCGCT CTTTGAGCGC GGCGAAACCC AAATCATGGG GATCACCACC
CTCAACATGC TGAAGATGGA ACAGCAGATT GATTCTCTTG GCCCAGAGAC GCGTAAACGC
TATATGCACA ACTACAACTT CCCGCCGTAC TCAACGGGGG AAACTGGACG CGTTGGAAGC
CCGAAGCGCC GGGAAATCGG CCACGGTGCG CTTGCTGAAC GCGCGCTTGT CCCTGTGCTC
CCAAGCCGTG AAGACTTCCC TTACGCTATT CGTCAGGTCT CTGAAGCTCT AGGGTCGAAC
GGTTCCACAT CCATGGGATC TGTCTGTGCA TCGACATTGT CGCTGCTCAA CGCCGGTGTT
CCATTGCGGG CGCCTGTTGC TGGTATTGCA ATGGGACTGA TCTCAGACAC AGTCGATGGT
GAAACCCGCT ACGCTGCCCT GACGGACATT CTGGGCGCTG AAGACGCATA CGGCGACATG
GACTTCAAGG TTGCGGGGAC CCGCGATTTT GTCACCGCGA TCCAGCTTGA CACCAAGCTT
GACGGTATCC CTGCTTCGGT TCTTGCCGGT GCATTGACTC AAGCACGTGA TGCCCGCTAC
ACGATCCTTG ATGTCATCGA AGAAGCTATT GATCAGCCAG ATGACATGAG TCCTCATGCA
CCACGTGTGA TCGCAGTGCA AGTTCCTGTT GACAAGATCG GTGAGGTTAT TGGCCCCAAG
GGCAAGATGA TCAACCAGAT CCAAGAGGAC ACGGGCGCTG ACATCACTAT TGAAGACGAC
GGAACTGTCT ACATTGGTGC TGCAGATGGC ACATCTGCTG AAGCGGCACG CGCTGCAATT
AACGCGATTG CCAACCCGCA TGTTCCTGAG GTCGGAGAAC GCTTTGTGGG CACGGTCGTG
AAGACCACAA CCTTTGGTGC GTTCGTGTCA CTGACCCCAG GTAAAGATGG GTTGCTGCAC
ATCAGCCAAA TCCGTCGCCT GGTGGGTGGA CGCCGCGTGG AGAATGTTGA CGACGTTGTA
TCTGTCGGGC AAAAGCTTCA GGTTGAAATT GCTGAGATTG ACCCCCGAGG CAAGTTGTCA
CTTCACGCAG TGGTTGACGA TGAAGCAGCA GAACAGGGCG ACAACTGA
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| Protein sequence | MEGPEIQFAE AVIDNGRFGT RTVRFETGRL ARQAAGSACA YLDGDTMLLS TTAVGKHPKD
QFDFFPLTVD VEERMYAAGR IPGSFFRREG RPSTEAILAC RLIDRPLRPS FVKGLRNEVQ
VVITVLSIHP DEAYDVLAIN AASMSTQLSG LPYSGPVGGV RVALIDDQWV AFPKHSDKER
AVFDMVVSGR IVGDDVAIMM VEAEATENSW NLVKNQGATA PTEGVVAEGL EAAKPFIRAL
CEAQIELAAK SAKPQMEFPL FLDYQDDVYE AVKNAATDDL RTALTIADKQ ERENRQDEIK
DATLASLAEQ FEGRDKEISA AIRSLTKSLV RQRVLTDGVR IDGRGLADIR TLSAEVEVVP
RVHGSALFER GETQIMGITT LNMLKMEQQI DSLGPETRKR YMHNYNFPPY STGETGRVGS
PKRREIGHGA LAERALVPVL PSREDFPYAI RQVSEALGSN GSTSMGSVCA STLSLLNAGV
PLRAPVAGIA MGLISDTVDG ETRYAALTDI LGAEDAYGDM DFKVAGTRDF VTAIQLDTKL
DGIPASVLAG ALTQARDARY TILDVIEEAI DQPDDMSPHA PRVIAVQVPV DKIGEVIGPK
GKMINQIQED TGADITIEDD GTVYIGAADG TSAEAARAAI NAIANPHVPE VGERFVGTVV
KTTTFGAFVS LTPGKDGLLH ISQIRRLVGG RRVENVDDVV SVGQKLQVEI AEIDPRGKLS
LHAVVDDEAA EQGDN
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