Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0854 |
Symbol | |
ID | 8380037 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 920288 |
End bp | 920935 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645003595 |
Product | peptide deformylase |
Protein accession | YP_003160819 |
Protein GI | 256832092 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000749472 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCACC CCATCGTGAT TGATGGTGAC CCTGTCCTTC GTCAGCGTGC GGCGGAGGTG ACAGAGTTTG ACGATGCGCT GGTCCAGTTG GTTGCGGACA TGTACGACAC GATGCGAGTG TCGAATGGGG TGGGGCTTGC TGCCCCTCAG ATTGGGGTAG GTCAGCGGAT TTTTGTGTTT GATGCTCCTG ATGAGGATGA GCAACGGCGT GGTGTGGTGG TCAATCCGTC ACTGATGATT GTGCAGCGGC CACCGCGTTT TGCGCTCAAA GGTGAGGGGA AGCGCCCCCC GAAGTCGTTG ACTGATGTGG AAGGGTGTTT GTCGTTTCCG GGCCCAGATT TTGAGGCGAA GCGTCACTAT GCGGTGCGGG TGACGGGGTG GGATGAGCAC GGTGAACCTG TGGTTATTGA TGGTGAGGGG TGGTTTGCTC GGGTCCTTCA GCATGAATAT GACCACCTTG ACGGGTTGTT GTATGTGGAC CGGCTCAAGG GACGGGACAA GGCTGAAGCT CGCGCTATTT CTCAGGAAAA CGGGTGGGGA GTTCCAGGGT TATCGTGGAT GCCGGGTGTG GACCCGGACC CATTTGGCCA CGACGTCCCT GACGGTGACG GCGATGTGCA GGAGACTGAC AGCGCTTCTG ATGAGTAG
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Protein sequence | MIHPIVIDGD PVLRQRAAEV TEFDDALVQL VADMYDTMRV SNGVGLAAPQ IGVGQRIFVF DAPDEDEQRR GVVVNPSLMI VQRPPRFALK GEGKRPPKSL TDVEGCLSFP GPDFEAKRHY AVRVTGWDEH GEPVVIDGEG WFARVLQHEY DHLDGLLYVD RLKGRDKAEA RAISQENGWG VPGLSWMPGV DPDPFGHDVP DGDGDVQETD SASDE
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