Gene Jden_0707 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJden_0707 
Symbol 
ID8379892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJonesia denitrificans DSM 20603 
KingdomBacteria 
Replicon accessionNC_013174 
Strand
Start bp763648 
End bp765282 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content59% 
IMG OID645003448 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_003160674 
Protein GI256831947 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTGGCACC GCCCACGACG CACGACACGA GGCAAAGTGA CCACGTCTTC TCATACTGAA 
CTCACCACAT CATTCGCAGA CTTCCCCCTG CGTAGCGACA TCGTTGCTGC GCTCGCGTCA
GCAGGAATTG TCTCACCGTT TCCCATCCAA TCGTTGACTC TGCCCGTCGC ATTGTCTGGA
CACGACATTA TTGGGCAAGC GAAAACAGGA ACCGGGAAAA CCCTTGGTTT TGGGCTCCCT
CTCCTCAACC GCGTTGTCGC CCCCGGAGAG GAAGGCTTCG ACCAACTCCC CGCCCCGGGC
AAACCACAAG CTGTTGTCAT CGTCCCTACC CGCGAACTTG CCGTACAAGT GGCAAAAGAC
TTGGAGTTGG CGTCATCCAC CCGATCCGTT CGGATCGTCC AACTCTATGG CGGGCGCGCA
TACGAACCGC AGATCGCGGC GCTTAACCGG GGTGTTGAGG TCGTTGTTGG AACACCAGGC
CGCATGATTG ACATGCTGAA ACAAAAGCAC CTCACCCTCC TTCGTGCCGG GGTGATCGTC
CTTGATGAAG CAGACGAAAT GCTTGACCTA GGGTTCCTCC CCGATGTCGA GAAAATCCTC
GCGCAAACAC CTGCTGTACG CCAAATGATG CTGTTCTCCG CAACGATGCC AGGCGCTGTA
GTCGCCATGG CGCGGCGGTA CATGAACCAA CCCACACACA TCAGAGCCCA GGACCCCGAA
GATTTGGGCT CCACGGTGAA GAACATCACC CAAGTGGTAT ATCGCGCACA CCCACTCGAC
AAGGTCGAGA TGATTGCCCG TATTTTGCAA GCCCGAGGGC GCGGGTTGTC CGTCATCTTC
ACCCGAACAA AACGCAACGC CGCAAAGGTA GCCGACGAAC TCACTGAACG AGGATTCGCT
GCCGGTGCGT TGCACGGTGA CCTTGGGCAA GGAGCCCGCG AACAGGCACT CCGGGCGTTT
CGGAACGGAA AAGTTGACGT CCTCGTGGCC ACAGACGTGG CAGCACGAGG AATTGACGTC
GAGAATGTCA CCCACGTCAT TAACTATCAG GTCCCTGAAG ACGACAAGGT CTACCTTCAC
CGTACTGGGC GCACAGGCCG GGCAGGAAAC AAAGGCACCG CCGTCACCTT CGTTGACTGG
GAGGATCTGC ACACGTGGAC ACTCATCAAC AAAGCGCTCG GGTTAAACAT CCCAGAACCT
GTTGAAACGT ACTCGTCCTC CCCACACCTG TTCACGGACC TCAACATTCC TGAAGGAACA
AAAGGCCGAC TGCCCAAGGA CCGCCAAACC CGCGCAGGGC TTCAGGCAGA AGAACTCGAA
GACGTGGGTG AAACAGGCCG TCGTACCCCA AAGAAGACGT CCACCCCCGC ATCGTCACAG
CGCCGTACAG ACACAGCGTC ACGAGGCGAA CGGGACCGAC CAGCCCGCCA ACGCACCCGC
CGCCGGGTCG CACCACGCAC CCAGCAGCAA GCAGGCGAAG CACCGCAGTC AACACCGACG
ACTAACGCTG GCACATCGAG CACCGCGCCG CCTCAGGATC AGGCGGCGTC TGCGCAGCCA
ACCCGCGAGC GTCGTCCACG GCAACGTCGT CGCCGCCGGT CAGATCAGGG TGAAGGCACA
GAGTCATCAC GCTGA
 
Protein sequence
MWHRPRRTTR GKVTTSSHTE LTTSFADFPL RSDIVAALAS AGIVSPFPIQ SLTLPVALSG 
HDIIGQAKTG TGKTLGFGLP LLNRVVAPGE EGFDQLPAPG KPQAVVIVPT RELAVQVAKD
LELASSTRSV RIVQLYGGRA YEPQIAALNR GVEVVVGTPG RMIDMLKQKH LTLLRAGVIV
LDEADEMLDL GFLPDVEKIL AQTPAVRQMM LFSATMPGAV VAMARRYMNQ PTHIRAQDPE
DLGSTVKNIT QVVYRAHPLD KVEMIARILQ ARGRGLSVIF TRTKRNAAKV ADELTERGFA
AGALHGDLGQ GAREQALRAF RNGKVDVLVA TDVAARGIDV ENVTHVINYQ VPEDDKVYLH
RTGRTGRAGN KGTAVTFVDW EDLHTWTLIN KALGLNIPEP VETYSSSPHL FTDLNIPEGT
KGRLPKDRQT RAGLQAEELE DVGETGRRTP KKTSTPASSQ RRTDTASRGE RDRPARQRTR
RRVAPRTQQQ AGEAPQSTPT TNAGTSSTAP PQDQAASAQP TRERRPRQRR RRRSDQGEGT
ESSR