| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0581 |
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| Symbol | |
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| ID | 8379766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 630466 |
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| End bp | 634338 |
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| Gene Length | 3873 bp |
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| Protein Length | 1290 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 645003318 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_003160548 |
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| Protein GI | 256831821 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.106587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0166429 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTCGACG TCACTGAATT CGACGAGCTG CGTATCGGAC TCGCCACAGC TGAGGACATT
CGTCACTGGT CTTACGGCGA AGTAAAGAAA CCCGAAACGA TCAACTACCG TACCCTCAAG
CCGGAGAAGG ATGGTCTCTT CTGCGAGAAG ATCTTCGGCC CCACACGTGA CTGGGAATGC
TACTGCGGCA AATACAAGCG TGTGCGATTC AAAGGCATCA TCTGTGAACG CTGCGGTGTG
GAAGTCACGC GTTCCAAAGT CCGTCGTGAA CGGATGGGCC ACATCGAGTT GGCTGCGCCT
GTTACCCACA TTTGGTTCTT CAAGGGTGTC CCATCGCGGC TCGGCTATCT CCTCGATTTA
GCTCCAAAAG ACCTTGAAAA GGTCATCTAC TTCGCGGCGT ACATGGTCAC ATCCGTTGAC
GAAGATGCTC GTCATGAGGA TCTGCCCAAC CTGCAAAACG AAATCGATCT GGAACGTAAA
GAGATCGAAG ACCGCCGTGA CAACGACATT AACAAGCGGG CAGAGAAGCT TGAAGCTGAC
CTCGCCGAAC TTGAAGCTGA AGGCGCCCGG GCTGATCAGC GCCGTAAAGT ACGTGATGCA
GCTGAACGAG AAATGGCTCA GCTTCGTAAA CGTGCGGATC AAGAACTCGA ACGCCTCGAC
CTTGTGTGGG ACAAGTTCAA GAACTTGAAG GTGTCCGACC TTGAGGGTGA CGAACTGATC
TTCCGCGAAC TTCAAGATCG TTACGGAACC TACTTCGAGG CATCGATGGG TGCTGCGGCA
ATCCAGAAAC GTCTCGAGAA CTTTGACCTG GAAGCAGAAG CCGAATCGCT TCGTGAGATC
ATCCGCTCAG GCAAGGGCCA AAAGAAAACG CGCGCCCTCA AGCGTTTGAA GGTCATCAAC
GCGTTCTTGA CCACCACGAA CAAACCATCT GCCATGGTCT TGGACGTAGT TCCGGTCATC
CCACCAGACT TGCGTCCCAT GGTGCAACTC GACGGTGGCC GTTTTGCGAC CTCTGACCTG
AACGACTTGT ACCGCCGTGT GATCAACCGG AACAACCGTC TCAAGCGTTT GCTCGACCTT
GGTGCCCCAG AGATCATCGT GAACAACGAG AAGCGGATGC TGCAAGAAGC AGTAGATTCG
CTCTTCGACA ACGGACGCCG TGGCCGACCA GTGACCGGAC CCGGAAACCG ACCCCTGAAG
TCTATTTCGG ACATGCTGAA GGGTAAGCAG GGGCGTTTCC GTCAAAACCT GCTCGGAAAG
CGCGTGGACT ACTCCGGTCG TTCCGTGATT GTGGTTGGCC CCACCTTGAA ACTGCACCAG
TGCGGTTTGC CGAAACAAAT GGCACTTGAG CTGTTCAAGC CATTTGTCAT GAAGCGTCTG
GTTGACCTCA ACCACGCGCA GAACATTAAG TCCGCCAAAC GTATGGTGGA ACGCGGGCGT
TCTGTCGTGT GGGATGTCCT CGAAGAGGTC ATTACCGAAC ACCCAGTACT GCTGAACCGT
GCACCGACGC TTCACCGTTT GGGTATTCAA GCGTTCGAGC CACAACTCGT TGAAGGAAAG
GCAATCCACC TGCACCCACT TGTGTGTGCT GCGTTCAACG CCGACTTCGA CGGTGACCAG
ATGGCTGTGC ACCTCCCGCT ATCAGCTGAA GCGCAGGCCG AAGCGCGCAT TCTCATGTTG
TCGTCCAACA ACATCTTGAA GCCGTCTGAC GGTCGCCCCG TGACCATGCC ATCACAGGAC
ATGATCATTG GTCTGTTCCA CTTGACCGCG GAACGCGAAG ACCCCAAGGG AGCGGGACGC
GCTTTCTCCC ATGTCTCTGA AGCGATCATG GCATTTGACT CAGGTGAACT TGACCTCAAC
GCTCCGATTA AGGTGCGTAT GGACGGGTTC GTTCCACCAC GCAAGGGGTG GACTGCTCCA
GATGGATGGG CGCAAGGCGA TCCAACTGTT GTCGAAACGA CGCTGGGACG GGCGCTGTTC
AACGAACTGC TTCCTGTGGA CTACCCCTAT GTCAATACAG TTGTCGACAA AAAGAAGCTG
TCACAGATCG TCAACGAACT CGCTGAGAAC TACCCGAAGG TAGAAGTTGC TGAGTCTCTT
GACGCACTCA AGGAAGCCGG CTTCCGCTGG GCAACCCGCT CTGGTGTGTC GATCGCGATC
TCCGACGTCG CAACGCCCAC AGCGAAAGCT GAGATCCTCA CGGATCACGA GGCGAAAGCG
CTGAAGATCC AGCAGCAGTA CGACAAGGGT CTGATCACTG ACGACGAGCG TCGACAGGAA
CTGATCGAGA TTTGGACCCA AGCAACGGAC AAGGTTGCTA AGGCCATGCA GGACAACTTC
CAAGCCCGGA ACACAGTGTT CCGGATGGTG GGGTCCGGTG CTCGTGGTAA CTGGATGCAG
GTACGTCAGA TCGCTGGTAT GCGTGGTCTT GTGGCAAACC CGAAGGGTGA CATCATCCCG
CGTCCGATCA AGGCAAACTA CCGTGAAGGG CTCTCCGTTC TTGAGTACTT CATCGCGACT
CACGGTGCAC GTAAGGGTCT CGCAGACACC GCGTTGCGTA CCGCTGACTC CGGTTACTTG
ACCCGTCGTC TCGTTGACGT CTCCCAGGAT GTCATCGTGC GTGAGCTTGA CTGTGGTACC
GAACGAGGAC TGTCTTTGCC AGTTGGCGAG GACATCGGCG ACGGAACACT GGTCCGCCAC
GAAAAGGTTG AGCAGTCAAT CTACACCCGT ACCCTCGCGC AAGACGTTGA GGTCGACGGA
GTCGTGATTG GTCGCGCCGG AGATGACGTT GGTGACCGCC TGATCGATCA GCTGGTTGCC
GGTGGTGTGC ACAACCTCAA GGTACGTTCG GTGTTGACCT GTGAGTCACG CGTGGGAACC
TGCGCGAAGT GCTATGGCCG CTCCTTGGCT ACCGGAAAGC TGGTAGACAT TGGTGAAGCT
GTCGGTATTA TCGCTGCTCA GTCCATCGGT GAACCAGGTA CACAGCTCAC AATGCGTACC
TTCCACACTG GTGGTGTTGC ATCCGCAGAT GACATTACGC AAGGTCTGCC TCGCGTGACT
GAACTCTTTG AAGCCCGAAC CCCGAAGGGT GAGGCGCCGA TCGCTGAGTA CTCCGGTTCG
ATTCGCATCG AAGATGGTGA CCGTAGCCGC CAAATCATCC TCACCCCTGA GGATGATTCG
GAAGAGATCA GCTACCAAGT CTCCAAGCGT GCACGCCTTT TAGTGGCAGA TGGTGACCGG
GTTGCTGTGG GAACGCAGCT TGTACAGGGT GCAGTCGACC CGAAGAAGGT CCTTCGTATC
CTTGGTCCCC GGGCAGCGCA GAAACACCTC GTGGACGAAG TTCAGGAAGT GTACCGTTCT
CAGGGTGTGG ATATTCACGA CAAGCACATC GAGGTCATCG TGCGTCAGAT GCTGCGTCGT
GTCACCATCC TTGATTCAGG GACGACGGAT CTTCTGCCAG GGGAACTCGC AGAGCGTGCC
CGTTTTGAAG ATGCGAACCG TGAGGCTCTC TCCACAACAG GGACCCCGGC ATCGGGACGT
CCAGAGTTGA TGGGGATCAC CAAGGCATCG TTGGCGACCG ATTCGTGGTT GTCCGCGGCG
TCGTTCCAGG AGACCACTCG AGTGCTCACG GAGGCTGCAA TGTCCGGCCG CCGCGACCCA
CTTCTTGGGC TCAAGGAAAA CGTCATCCTC GGTAAGCTCA TTCCAGCAGG GACGGGGCTA
CCTCGTTACC GCAACGTGGA TGTCGAACCC ACAGAGGAAG CGAAGTCCGA GTTGTACCCG
AACTTCGGTT ACGACGAGAT CGACTTCTCT GGCTCTGGCT TCGGTGGAGA CACAATCTCC
CTCGACGACA TCGAATTCCC TGACTTCCGT TAG
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| Protein sequence | MLDVTEFDEL RIGLATAEDI RHWSYGEVKK PETINYRTLK PEKDGLFCEK IFGPTRDWEC
YCGKYKRVRF KGIICERCGV EVTRSKVRRE RMGHIELAAP VTHIWFFKGV PSRLGYLLDL
APKDLEKVIY FAAYMVTSVD EDARHEDLPN LQNEIDLERK EIEDRRDNDI NKRAEKLEAD
LAELEAEGAR ADQRRKVRDA AEREMAQLRK RADQELERLD LVWDKFKNLK VSDLEGDELI
FRELQDRYGT YFEASMGAAA IQKRLENFDL EAEAESLREI IRSGKGQKKT RALKRLKVIN
AFLTTTNKPS AMVLDVVPVI PPDLRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLLDL
GAPEIIVNNE KRMLQEAVDS LFDNGRRGRP VTGPGNRPLK SISDMLKGKQ GRFRQNLLGK
RVDYSGRSVI VVGPTLKLHQ CGLPKQMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERGR
SVVWDVLEEV ITEHPVLLNR APTLHRLGIQ AFEPQLVEGK AIHLHPLVCA AFNADFDGDQ
MAVHLPLSAE AQAEARILML SSNNILKPSD GRPVTMPSQD MIIGLFHLTA EREDPKGAGR
AFSHVSEAIM AFDSGELDLN APIKVRMDGF VPPRKGWTAP DGWAQGDPTV VETTLGRALF
NELLPVDYPY VNTVVDKKKL SQIVNELAEN YPKVEVAESL DALKEAGFRW ATRSGVSIAI
SDVATPTAKA EILTDHEAKA LKIQQQYDKG LITDDERRQE LIEIWTQATD KVAKAMQDNF
QARNTVFRMV GSGARGNWMQ VRQIAGMRGL VANPKGDIIP RPIKANYREG LSVLEYFIAT
HGARKGLADT ALRTADSGYL TRRLVDVSQD VIVRELDCGT ERGLSLPVGE DIGDGTLVRH
EKVEQSIYTR TLAQDVEVDG VVIGRAGDDV GDRLIDQLVA GGVHNLKVRS VLTCESRVGT
CAKCYGRSLA TGKLVDIGEA VGIIAAQSIG EPGTQLTMRT FHTGGVASAD DITQGLPRVT
ELFEARTPKG EAPIAEYSGS IRIEDGDRSR QIILTPEDDS EEISYQVSKR ARLLVADGDR
VAVGTQLVQG AVDPKKVLRI LGPRAAQKHL VDEVQEVYRS QGVDIHDKHI EVIVRQMLRR
VTILDSGTTD LLPGELAERA RFEDANREAL STTGTPASGR PELMGITKAS LATDSWLSAA
SFQETTRVLT EAAMSGRRDP LLGLKENVIL GKLIPAGTGL PRYRNVDVEP TEEAKSELYP
NFGYDEIDFS GSGFGGDTIS LDDIEFPDFR
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